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piescope

PIE-scope: integrated cryo-correlative light and FIB/SEM microscopy

This is the back end library supporting PIE-scope microscopy functions. The front ebd GUI can be found at: https://github.com/DeMarcoLab/piescope_gui

You can read more about this instrument for correlative microscopy here: https://doi.org/10.7554/eLife.45919.001

Installation

See the detailed installation guide INSTALLATION.md

Install or upgrade to the latest version directly from GitHub with: If you already have an installation and want to upgrade your version of piescope, download the latest release wheel file (.whl) from:

https://github.com/DeMarcoLab/piescope/releases

pip install $NAME_OF_WHEEL_FILE.whl

Runing the program

You can check what version you're currently using in python:

    import piescope
    piescope.__version__

This library is not generally intended for direct use, instead it is expected it will be used as the back end functionality to the piescope_gui library: https://github.com/DeMarcoLab/piescope_gui