_pkgdown.yml

url: https://genentech.github.io/BayesERtools/
template:
  bootstrap: 5

navbar:
  structure:
    left: [home, intro, reference, bayeserbook, articles, tutorials, news]
    right: [github, coverage]
  components:
    bayeserbook:
      text: "BayesERbook"
      href: "https://genentech.github.io/BayesERbook/"
    github:
      icon: fa fa-github fa-lg
      href: "https://github.com/genentech/BayesERtools"
      aria-label: Github project page

articles:
  - title: Articles
    navbar: ~
    contents:
    - overview_of_the_package

reference:
- title: 'Step 1: Develop ER models'
- subtitle: Linear model
  contents:
  - dev_ermod_bin
  - dev_ermod_bin_exp_sel
  - dev_ermod_bin_cov_sel
- subtitle: Emax model
  contents:
  - dev_ermod_emax
  - dev_ermod_emax_exp_sel
- title: 'Step 2: Simulate responses'
- contents:
  - sim_er
  - sim_er_new_exp
  - sim_er_new_exp_marg
  - calc_ersim_med_qi
- title: 'Step 3: Plot ER'
- contents:
  - plot_er
  - plot_er_gof
  - plot_er_exp_sel
- title: 'Step 4: Model evaluation'
- contents:
  - eval_ermod
  - loo
  - kfold
- title: 'Other post-processing functions'
- subtitle: Covariate selection
  contents:
  - plot_cov_sel
- subtitle: Covariate effect forest plot
  contents:
  - build_spec_coveff
  - edit_spec_coveff
  - sim_coveff
  - plot_coveff
  - print_coveff
- subtitle: Others
  contents:
  - as_draws
  - starts_with("prior_summary")
  - starts_with("p_direction")
- title: 'Utility functions'
- contents:
  - extract_method
  - extract_coef_exp_ci
- title: 'Data'
- contents:
  - d_sim_binom_cov
  - d_sim_lin
- title: S3 methods
  contents:
  - ermod_method
  - ersim_method
  - ermod_exp_sel_method
  - ermod_cov_sel_method