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Improve multiple track view by supporting part of BED track visualization #170

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olegs opened this issue Sep 6, 2021 · 2 comments
Open

Improve multiple track view by supporting part of BED track visualization #170

olegs opened this issue Sep 6, 2021 · 2 comments
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enhancement New feature or request
Milestone
JBR 2.0

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@olegs
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olegs commented Sep 6, 2021

Instead of locations, I see whole chromosomes of each location.

Screenshot 2021-09-06 at 16 09 32

JBR version:
JBR Genome Browser, build #1.0.beta.5379, built on July 16, 2021
Plugins JBR base tracks UCSC session IGV session Genomes configurator plugin Load from ENCODE support SPAN support BED files tuning Overlap BED tracks System information OS: Mac OS X, 10.16 (x86_64) JRE: 11.0.10+9-LTS JVM: OpenJDK 64-Bit Server VM by Amazon.com Inc. Max Heap Size: 2.0 GB
@olegs olegs added bug Something isn't working major High issue priority labels Sep 6, 2021
@olegs
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olegs commented Nov 1, 2021

After some Investigation it turned out that copy-paste of TSV bed format doesn't work, this doesn't work (TAB separated):

chr1	1	10000
chr2	10000	20000

These examples work fine

chr1:1-10000	chr2:10000-20000

and

chr1:1-10000
chr2:10000-20000

@olegs olegs removed the major High issue priority label Nov 1, 2021
@olegs olegs changed the title Multiple track view is broken Improve multiple track view by supporting part of BED track visualization Nov 1, 2021
@olegs olegs added enhancement New feature or request and removed bug Something isn't working labels Nov 1, 2021
@iromeo
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iromeo commented Sep 23, 2023

@olegs is it already fixed?

@iromeo iromeo added this to the JBR 1.1 milestone Sep 23, 2023
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enhancement New feature or request
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JBR 2.0
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@iromeo @olegs