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Allow to view overlap regions in region list dialog #252

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iromeo opened this issue Dec 1, 2023 · 0 comments
Closed

Allow to view overlap regions in region list dialog #252

iromeo opened this issue Dec 1, 2023 · 0 comments
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@iromeo
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iromeo commented Dec 1, 2023

Context Menu | Overlap table feature makes a table with paired overlap of tracks (see screenshots below). The dialog calculates overlap regions and reports their number, but we cannot easily view the regions in overlap. So it will be useful to implement a feature that:

Show a context menu for cell, that allows to:

  1. Load overlapped regions into regions list dialogue (Add region selection tool #250)
  2. Add overlapped regions as a new track into the browser. I.e. filter regions from one track that overlaps other regions & export to the file.

image
image

P.S.: Not sure if we should implement only 1 or 2 or both. When 2 is implemented, the user will be able to show new track regions in the region list dialogue using the existing feature. The drawback - too many mouse clicks in order to only view a couple of examples from the overlap if a separate resulting track is not needed.

@Xewar313 Xewar313 self-assigned this Jan 21, 2024
iromeo pushed a commit to JetBrains-Research/bioinf-commons that referenced this issue Feb 23, 2024
* Preparation to add region selection to overlap table
* Add flanking support to intersectRanges method
* Part of JetBrains-Research/jbr#252
@iromeo iromeo closed this as completed Feb 23, 2024
@iromeo iromeo added this to the JBR 2.0 milestone Apr 15, 2024
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