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Cannot load BigWig tracks from DEEP project #73

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iromeo opened this issue Jun 6, 2019 · 2 comments
Open

Cannot load BigWig tracks from DEEP project #73

iromeo opened this issue Jun 6, 2019 · 2 comments
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@iromeo
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iromeo commented Jun 6, 2019

E.g. both https://epigenomesportal.ca/tracks/DEEP/hg19/63138.DEEP.43_Hm03_BlMa_Ct.WGB-Seq.methylation_profile.bigWig and http://epigenomesportal.ca/tracks/DEEP/hg19/63138.DEEP.43_Hm03_BlMa_Ct.WGB-Seq.methylation_profile.bigWig could be download in web browser, but show "url isn't accessible" error in JBR

@iromeo iromeo self-assigned this Jun 6, 2019
@iromeo
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iromeo commented Jun 6, 2019

Two issues here:

  1. https link doesn't work due to ``

Solution update JDK to some version which supports epigenomesportal.ca certificate or

  1. http redirects to https. In Java redirection to another protocol not supported out-of-the box, so we get 301 error. So let's improve logging and show suggested new url instead of unsafe redirect (e.g. https -> http)

iromeo added a commit to JetBrains-Research/bioinf-commons that referenced this issue Jun 6, 2019
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iromeo commented Jun 6, 2019

As for 1 maybe we need to bundle this certificate into JBR bundled JVM.

@iromeo iromeo added the 3rd party Depends on 3rd party library label Jun 6, 2019
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