Copyright © German Cancer Research Center (DKFZ) and contributors. Please make sure that your usage of this code is in compliance with its license:
This repository contains the code related to our MICCAI 2024 Brain Tumor Progression Challenge (BraTPRO). Also checkout the challenge Website
Please install docker for submissions to the challenge: https://www.docker.com/get-started
All python requirements can be installed via
pip install -r requirements.txt
In addition, the temporal registration of images is done using FSL, which can be installed separately.
The python script dataset_download/download_and_convert_dataset.py can be used to automatically download and convert the pulbic LUMIERE Dataset in the suggested dataset format.
Run it using
python dataset_download/download_and_convert_dataset.py dataset_location
where dataset_location is the path where the dataset should be saved.
Note that this requires at least ~65GB of free space!
Code for the metircs used in the challenge evaluation can be found in evaluation/metrics.py