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Option to save DICOM SEG in OHIF is missing #1805

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chezhia opened this issue Jan 10, 2025 · 3 comments
Open

Option to save DICOM SEG in OHIF is missing #1805

chezhia opened this issue Jan 10, 2025 · 3 comments

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@chezhia
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chezhia commented Jan 10, 2025

Describe the bug
Evaluating the use of OHIF instead of 3D slicer for a project. The segmentation is returned fine as a DICOM-SEG, but not able to see the save label option under the Active Learning tab.

To Reproduce

  1. Running latest monailabel docker image.
  2. Model is in monaibundle format and works perfectly fine with 3D slicer.
  3. Command Used: monailabel start_server --app apps/monaibundle --studies http://HOSTIP:8042/dicom-web --conf models tcv_heartlung_ct_bundle

Expected behavior
Ability to save DICOM-SEG under the Active-Learning Tab. Only Next Sample and Update Model options are seen.

Screenshots
image

Environment
Docker and Windows with Nvidia GPU.

@Joeycho
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Joeycho commented Feb 19, 2025

@chezhia Does active learning work? Did you check segmentation mode from OHIF?

@chezhia
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chezhia commented Feb 19, 2025

@Joeycho - Active learning seems to work, as in, it selects the next image and loads it if I hit next sample. I did not select segmentation mode, as that does not give me options to interact with the MONAI Label server. I selected the MONAILabel mode from OHIF front page to get to the view in the screen shot.

@Joeycho
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Joeycho commented Feb 20, 2025

@chezhia How is the log from MONAI Label? Probably, you can find the path of the generated DICOM-SEG file. Usually saved at tmp location.

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