forked from deepmodeling/abacus-develop
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Dockerfile
41 lines (34 loc) · 2.65 KB
/
Dockerfile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
# To build this Dockerfile, run `docker build -t abacus - < Dockerfile`.
# Build without cloning the repo by `docker build https://github.com/deepmodeling/abacus-develop.git#develop`,
# and optionally choose the Dockerfile in use by appending e.g. `-f Dockerfile.gnu`.
# Alternatively, pull the image with `docker pull ghcr.io/deepmodeling/abacus:latest`.
# Also available at `docker pull registry.dp.tech/deepmodeling/abacus:latest`.
# Docker images are aimed for evaluating ABACUS.
# For production use, please compile ABACUS from source code and run in bare-metal for a better performace.
FROM ubuntu:22.04
RUN apt update && apt install -y --no-install-recommends \
libopenblas-openmp-dev liblapack-dev libscalapack-mpi-dev libelpa-dev libfftw3-dev libcereal-dev libxc-dev \
g++ make cmake bc time sudo vim git
# If you wish to use the LLVM compiler, replace 'g++' above with 'clang libomp-dev'.
ENV GIT_SSL_NO_VERIFY=true TERM=xterm-256color \
OMPI_ALLOW_RUN_AS_ROOT=1 OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 OMPI_MCA_btl_vader_single_copy_mechanism=none
# This will fetch the latest commit info, and store in docker building cache.
# If there are newer commits, docker build will ignore the cache and build latest codes.
ADD https://api.github.com/repos/deepmodeling/abacus-develop/git/refs/heads/develop /dev/null
RUN git clone https://github.com/deepmodeling/abacus-develop.git --depth 1 && \
cd abacus-develop && \
cmake -B build && \
cmake --build build -j`nproc` && \
cmake --install build && \
rm -rf build && \
cd ..
#&& rm -rf abacus-develop
# If you have trouble cloning repo, replace "github.com" with "gitee.com".
CMD mpirun --use-hwthread-cpus abacus
# To run ABACUS built by this image with all available threads, execute `docker run -v <host>:<wd> -w <wd/input> abacus:latest`.
# Replace '<host>' with the path to all files(including pseudopotential files), '<wd>' with a path to working directory, and '<wd/input>' with the path to input folder(containing 'INPUT', 'STRU', etc.).
# e.g. after cloning the repo to `$HOME` and pulling image, execute `docker run -v ~/abacus-develop/tests/integrate:/workspace -w /workspace/101_PW_15_f_pseudopots abacus:latest`.
# To run ABACUS with a given MPI process number, execute `docker run -v <host>:<wd> -w <wd/input> -it --entrypoint mpirun abacus:latest -np <processes> abacus`.
# Note: It would be better using all available CPUs. Docker uses CFS to share the CPU resources, which will result in bad CPU affinity.
# To use this image as developing environment, execute `docker run -it --entrypoint /bin/bash abacus`.
# Please refer to https://docs.docker.com/engine/reference/commandline/run/ for more details.