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Investigate impact of using presets with minimap2 #1

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lcoombe opened this issue Jun 10, 2022 · 1 comment
Open

Investigate impact of using presets with minimap2 #1

lcoombe opened this issue Jun 10, 2022 · 1 comment

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@lcoombe
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lcoombe commented Jun 10, 2022

I saw that currently we aren't using any presets for minimap2 mappings:
https://github.com/bcgsc/goldrush-edit/blob/0cf23889ee9fe7854e55c3e8a03eb6cb8df7d98d/scripts/goldrush-edit-make#L56
It would be interesting to do some tests to see if setting -x map-ont has any impact on the final polishing
@warrenlr
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nice catch

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@warrenlr @lcoombe