diff --git a/README.md b/README.md index fb6b7ca..3f4f809 100644 --- a/README.md +++ b/README.md @@ -127,7 +127,7 @@ ntJoin assemble target=my_scaffolds.fa target_weight=1 reference_config=config_f #### Installing ntJoin using Conda ```sh -conda install -c bioconda -c conda-forge ntjoin=1.1.4 +conda install -c bioconda -c conda-forge ntjoin=1.1.5 ``` #### Installing ntJoin using Brew @@ -138,7 +138,7 @@ brew install brewsci/bio/ntjoin #### Installing ntJoin from the source code ```sh -curl -L --output ntJoin-1.1.4.tar.gz https://github.com/bcgsc/ntJoin/releases/download/v1.1.4/ntJoin-1.1.4.tar.gz && tar xvzf ntJoin-1.1.4.tar.gz +curl -L --output ntJoin-1.1.5.tar.gz https://github.com/bcgsc/ntJoin/releases/download/v1.1.5/ntJoin-1.1.5.tar.gz && tar xvzf ntJoin-1.1.5.tar.gz ``` ## Dependencies diff --git a/bin/ntjoin_run.py b/bin/ntjoin_run.py index 435870a..15719c4 100755 --- a/bin/ntjoin_run.py +++ b/bin/ntjoin_run.py @@ -35,7 +35,7 @@ def parse_arguments(): "increasing/decreasing to assign contig orientation [90]\n " "Note: Only used with --mkt is NOT specified", default=90, type=int) parser.add_argument('-t', help="Number of threads for multiprocessing [1]", default=1, type=int) - parser.add_argument("-v", "--version", action='version', version='ntJoin v1.1.4') + parser.add_argument("-v", "--version", action='version', version='ntJoin v1.1.5') parser.add_argument("--agp", help="Output AGP file describing scaffolds", action="store_true") parser.add_argument("--no_cut", help="Do not cut input contigs, place in most representative path", action="store_true") diff --git a/ntJoin b/ntJoin index 67559ee..ef54e84 100755 --- a/ntJoin +++ b/ntJoin @@ -2,7 +2,7 @@ # ntJoin: Scaffold assemblies using reference assemblies and minimizer graphs # Written by Lauren Coombe @lcoombe -# ntJoin v1.1.4 +# ntJoin v1.1.5 # Input files target=None @@ -117,7 +117,7 @@ endif help: @echo "" @echo "ntJoin: Scaffolding assemblies using reference assemblies and minimizer graphs" - @echo "ntJoin v1.1.4" + @echo "ntJoin v1.1.5" @echo "Usage: ntJoin assemble target= references='List of reference assemblies' reference_weights='List of weights per reference assembly'" @echo "" @echo "Options:" @@ -186,7 +186,7 @@ ifeq ($(ref), None) endif version: - @echo "ntJoin v1.1.4" + @echo "ntJoin v1.1.5" @echo "Written by Lauren Coombe (lcoombe@bcgsc.ca)" check_install: diff --git a/setup.py b/setup.py index 9f53fe8..cb07262 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ setuptools.setup( name="ntJoin", - version="1.1.4", + version="1.1.5", author="Lauren Coombe", author_email="lcoombe@bcgsc.ca", description="Genome assembly scaffolder using minimizer graphs",