From 8393fa2fd387503e0721fa0919a334dbf5d5796f Mon Sep 17 00:00:00 2001
From: Jake Fennick <jake.fennick@axleinfo.com>
Date: Thu, 9 Mar 2023 11:22:10 -0700
Subject: [PATCH] added PermissionError

---
 cwltool/job.py | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/cwltool/job.py b/cwltool/job.py
index e0368f194..fc69d17dd 100644
--- a/cwltool/job.py
+++ b/cwltool/job.py
@@ -100,7 +100,10 @@ def relink_initialworkdir(
                     pass
             elif os.path.isdir(host_outdir_tgt) and not vol.resolved.startswith("_:"):
                 ensure_writable(host_outdir_tgt, include_root=True)
-                shutil.rmtree(host_outdir_tgt)
+                try:
+                    shutil.rmtree(host_outdir_tgt)
+                except PermissionError:
+                    pass
             if not vol.resolved.startswith("_:"):
                 try:
                     os.symlink(vol.resolved, host_outdir_tgt)