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If kraken*report contains samples with a line containing "unclassfied" reads and other samples containing no such line then multiqc will interpret the former as "kraken" and the latter as "bracken" output - this will result in two different sections and also screw the parsing of the multiqc_report.json
An example is here: 20230607_0958_P2-7085206e51685c-B_PAO92085_9bf914e7
The text was updated successfully, but these errors were encountered:
If kraken*report contains samples with a line containing "unclassfied" reads and other samples containing no such line then multiqc will interpret the former as "kraken" and the latter as "bracken" output - this will result in two different sections and also screw the parsing of the multiqc_report.json
An example is here: 20230607_0958_P2-7085206e51685c-B_PAO92085_9bf914e7
The text was updated successfully, but these errors were encountered: