Replace pipeline health

[edmundmiller]

Idea is to replace http://oldsite.nf-co.re/pipeline_health (Source code for that is here)

Tasks

Beta Give feedback

1. Click the button that says "fix everything" to make it all green
2. Dashboard to show all of the green checks

Project goals

Goal is to replace https://oldsite.nf-co.re/pipeline_health

This repo will be the "Actions" section at the bottom. We can then create a reporting page if we really need to see all the green checks

Old Pipeline Health PHP code

New Pipeline Health page

Initial Roll-out

The new pipelines that are broken:

• demo

• testpipeline

• denovotranscript

• meerpipe

• pairgenomealign

• phaseimpute

• reportho

Maybe:

• scdownstream
• scnanoseq

Plan

Short-term

1. Import a pipeline that has all the right settings
2. Fix the 5 pipelines above with the correct settings from the "model" repo
3. Keep importing new pipelines until we gain confidence in it.

Long-term

1. Wrangle in core_repos
2. Roll out to all pipelines
3. Switch all repos to main