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04_09_pathwayByTarget_Count.ttl
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@base <http://www.openphacts.org/api> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix dcterms: <http://purl.org/dc/terms/>.
@prefix api: <http://purl.org/linked-data/api/vocab#> .
@prefix rel: <http://vocab.org/relationship/> .
@prefix void: <http://rdfs.org/ns/void#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix drugbank: <http://bio2rdf.org/drugbank_vocabulary:> .
@prefix sio: <http://semanticscience.org/resource/>
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix cheminf: <http://semanticscience.org/resource/> .
@prefix qudt: <http://qudt.org/1.1/schema/qudt#> .
@prefix ops: <http://www.openphacts.org/api#> .
@prefix cito: <http://purl.org/spar/cito/> .
@prefix wp: <http://vocabularies.wikipathways.org/wp#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
<#pathway> a api:API ;
rdfs:label "Pathway"@en ;
api:sparqlEndpoint <http://alpha.openphacts.org:8890/sparql/> ;
api:contentNegotiation api:parameterBased ;
api:variable <#input> ;
api:variable wp:organism ;
api:dataset <http://www.wikipathways.org> ;
api:vocabulary <http://vocabularies.wikipathways.org/wp#> ;
api:vocabulary <http://xmlns.com/foaf/0.1/> ;
api:vocabulary <http://purl.org/dc/elements/1.1/> ;
api:vocabulary <http://purl.org/dc/terms/> ;
api:description "An API configuration to return information about pathways" ;
api:endpoint [
a api:ItemEndpoint ;
api:name "Pathways for Target: Count" ;
api:description "The total number of pathways which have as part the Gene Product specified.";
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_7165> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_3702> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_1423> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_9913> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_6239> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_9615> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_7955> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_7227> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_9796> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_9031> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_5518> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_9606> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_10090> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_1773> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_4530> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_9598> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_10116> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_4932> ;
api:variable <http://purl.obolibrary.org/obo/NCBITaxon_4577> ;
api:uriTemplate "/pathways/byTarget/count?uri={uri}" ;
api:itemTemplate "http://www.wikipathways.org" ;
api:exampleRequestPath "/pathways/byTarget/count?uri=http%3A%2F%2Fwww.conceptwiki.org%2Fconcept%2Fac1191aa-d28f-4102-94ec-0b67b40aeade" ;
api:viewer <#pathwayByTargetCountViewer> ;
api:defaultViewer <#pathwayByTargetCountViewer> . ] .
<http://www.wikipathways.org> api:label "WikiPathways" .
<http://vocabularies.wikipathways.org/wp#> api:label "wikipathways" .
<http://xmlns.com/foaf/0.1/> api:label "foaf" .
<http://purl.org/dc/elements/1.1/> api:label "dc" .
<http://purl.org/dc/terms/> api:label "dcterms" .
<http://purl.obolibrary.org/obo/NCBITaxon_7165> api:name "Anopheles gambiae" .
<http://purl.obolibrary.org/obo/NCBITaxon_3702> api:name "Arabidopsis thaliana" .
<http://purl.obolibrary.org/obo/NCBITaxon_1423> api:name "Bacillus subtilis" .
<http://purl.obolibrary.org/obo/NCBITaxon_9913> api:name "Bos taurus" .
<http://purl.obolibrary.org/obo/NCBITaxon_6239> api:name "Caenorhabditis elegans" .
<http://purl.obolibrary.org/obo/NCBITaxon_9615> api:name "Canis familiaris" .
<http://purl.obolibrary.org/obo/NCBITaxon_7955> api:name "Danio rerio" .
<http://purl.obolibrary.org/obo/NCBITaxon_7227> api:name "Drosophila melanogaster" .
<http://purl.obolibrary.org/obo/NCBITaxon_9796> api:name "Equus caballus" .
<http://purl.obolibrary.org/obo/NCBITaxon_9031> api:name "Gallus gallus" .
<http://purl.obolibrary.org/obo/NCBITaxon_5518> api:name "Gibberella zeae" .
<http://purl.obolibrary.org/obo/NCBITaxon_9606> api:name "Homo sapiens" .
<http://purl.obolibrary.org/obo/NCBITaxon_10090> api:name "Mus musculus" .
<http://purl.obolibrary.org/obo/NCBITaxon_1773> api:name "Mycobacterium tuberculosis" .
<http://purl.obolibrary.org/obo/NCBITaxon_4530> api:name "Oryza sativa" .
<http://purl.obolibrary.org/obo/NCBITaxon_9598> api:name "Pan troglodytes" .
<http://purl.obolibrary.org/obo/NCBITaxon_10116> api:name "Rattus norvegicus" .
<http://purl.obolibrary.org/obo/NCBITaxon_4932> api:name "Saccharomyces cerevisiae" .
<http://purl.obolibrary.org/obo/NCBITaxon_4577> api:name "Zea mays" .
wp:organism api:name "pathway_organism" ;
api:label "pathway_organism" ;
api:value "The rdfs:label for the pathway organism (URL encode). e.g.: Homo sapiens." ;
api:filterVariable "?pathway";
a rdf:Property .
<#input> api:name "uri" ;
api:label "uri";
api:value "A target URI. e.g.: http://identifiers.org/ncbigene/282478" ;
rdfs:range rdfs:Resource .
<#pathwayByTargetCountViewer> a api:Viewer ;
api:name "pathwayByTargetCountViewer" ;
api:template
"<http://www.wikipathways.org> ops:pathway_count ?count .";
api:where
"
{
SELECT ( COUNT ( DISTINCT ?pathway ) AS ?count ) WHERE {
GRAPH <http://www.wikipathways.org> {
?pathway a wp:Pathway ;
dc:title ?title ;
wp:organism ?organism_uri ;
wp:organismName ?organism ;
foaf:page ?page ;
dc:identifier ?identifier .
?gene_product dcterms:isPartOf ?pathway ;
dc:identifier|wp:bdbUniprot ?pw_target_uri .
VALUES ?type { wp:GeneProduct wp:Protein }
?gene_product a ?type .
}
OPTIONAL { GRAPH <http://www.conceptwiki.org> {
?cw_target_uri skos:prefLabel ?prefLabel .
} } } }" .