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swagger.json
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{
"swagger": "2.0",
"schemes": [
"http"
],
"info": {
"title": "Open PHACTS API development version",
"version": "2.2"
},
"paths": {
"/search": {
"get": {
"summary": "Free Text to 'thing'",
"description": "A set of URIs associated with the input free text.<br><hr><br>Response example: <br><br><hr><br> <span style=\"BACKGROUND-COLOR: #66FFCC\"> _:searchResult foaf:primaryTopic ?primaryTopic </span> ; <br/><span style=\"BACKGROUND-COLOR: #66FFCC\"> ops:type ?searchType ;</span> <br/><span style=\"BACKGROUND-COLOR: #A9A9F5\"> ops_api:result ?result .</span> <br/><span style=\"BACKGROUND-COLOR: #66FFCC\"> ?result skos:prefLabel ?label </span>; </br><span style=\"BACKGROUND-COLOR: #FFFFCC\"> :url ?url </span> .",
"tags": [
"Search"
],
"parameters": [
{
"name": "app_id",
"description": "Your access application id",
"type": "string",
"in": "query",
"required": true,
"x-data-threescale-name": "app_ids"
},
{
"name": "app_key",
"description": "Your access application key",
"type": "string",
"in": "query",
"required": true,
"x-data-threescale-name": "app_keys"
},
{
"name": "query",
"description": "Query eg. aspirin",
"type": "string",
"required": true,
"in": "query"
},
{
"name": "limit",
"description": "Limits the number of results; optional. Minimum value is 1, maximum value is common sense. ",
"required": false,
"default": 25,
"type": "string",
"in": "query"
},
{
"name": "type",
"description": "The type of thing you want to search for; optional. Limited to one value eg compound. Possible values are compound, target, gene, disease.",
"enum": [
"compound",
"target",
"gene",
"disease"
],
"required": false,
"in": "query",
"type": "string"
},
{
"name": "branch",
"description": "The search results will be filtered by this source authority. Possible values: chembl, chebi, uniprot, wikipathways, go, ocrs, drugbank. If no values are provided then all 'branches' will be searched",
"enum": [
"chembl",
"chebi",
"uniprot",
"wikipathways",
"go",
"ocrs",
"drugbank",
"disgenet"
],
"required": false,
"in": "query",
"type": "string"
},
{
"name": "_format",
"description": "The desired result format.",
"enum": [
"json",
"tsv",
"ttl",
"xml",
"rdf",
"rdfjson",
"html"
],
"type": "string",
"required": false,
"in": "query"
},
{
"name": "_callback",
"description": "For JSONP",
"type": "string",
"in": "query"
},
{
"name": "_metadata",
"description": "Additional metadata to be included with response.",
"enum": [
"execution",
"site",
"formats",
"views",
"all"
],
"type": "string",
"required": false,
"in": "query"
}
],
"responses": {
"200": {
"description": "OK"
},
"500": {
"description": "Internal server error"
}
}
}
},
"/compound": {
"get": {
"summary": "Compound Information",
"description": "Returns information about a single compound including (but not limited to): molecular weight, biotransformation, protein binding and toxicity. Adverse event data (AERS) is returned where available, as well as drug/drug interactions.<br><hr><br>Response template: <br><br><hr><br> ?ops_item <span style=\"BACKGROUND-COLOR: #FFCC99\"> skos:exactMatch ?cw_compound_uri </span> .<br> ?cw_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?compound_name </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.conceptwiki.org> </span> .<br> ?ops_item <span style=\"BACKGROUND-COLOR: #FFCC99\"> skos:exactMatch ?ocrs_compound_uri </span> .<br> ?ocrs_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:smiles ?smiles </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:inchi ?inchi </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:inchikey ?inchiKey </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:logp ?alogp </span> ;<br> ops:hb <span style=\"BACKGROUND-COLOR: #FFFFCC\"> a ?hba </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:hbd ?hbd </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:ro5_violations ?num_ro5_violations </span> ;<br> ops:ps <span style=\"BACKGROUND-COLOR: #FFFFCC\"> a ?psa </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:rtb ?rtb </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:molweight ?molweight </span> ;<br> ops:molformul <span style=\"BACKGROUND-COLOR: #FFFFCC\"> a ?molformula </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://chemistry.openphacts.org> </span> .<br> ?ops_item <span style=\"BACKGROUND-COLOR: #FFCC99\"> skos:exactMatch ?chembl_compound_uri </span> .<br> ?chembl_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ?bNode1 ?mw_freebase </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> a ?mol_type </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.ebi.ac.uk/chembl> </span> .<br> ?ops_item <span style=\"BACKGROUND-COLOR: #FFCC99\"> skos:exactMatch ?db_compound_uri </span> .<br> ?db_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:metabolism ?metabolism </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:description ?description </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:proteinBinding ?proteinBinding </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:toxicity ?toxicity </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:meltingPoint ?meltingPoint </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFCC99\"> drugbank:genericName ?drug_name </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFCC99\"> drugbank:drugType ?drugType </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFCC99\"> ops:drugInteraction ?interaction </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.openphacts.org/bio2rdf/drugbank> </span> .<br> ?interaction <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:interactingDrug ?interacting_drug </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:text ?interaction_text </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.openphacts.org/bio2rdf/drugbank> </span> .<br> ?ops_item <span style=\"BACKGROUND-COLOR: #FFCC99\"> skos:exactMatch ?aers_compound_uri </span> .<br> ?aers_compound_uri <span style=\"BACKGROUND-COLOR: #FFCC99\"> ops:reportedAdverseEvent ?event </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?aers_drug_name </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://aers.data2semantics.org/> </span> .<br> ?event <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?event_label </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://aers.data2semantics.org/> </span> .<br> ?ops_item <span style=\"BACKGROUND-COLOR: #FFCC99\">skos:exactMatch ?schembl_compound_uri</span> .<br> ?schembl_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:smiles ?s_smiles </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:inchi ?s_inchi </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:inchiKey ?s_inchiKey </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:logp ?s_logp </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:molweight ?s_molweight </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:hbd ?s_hbd </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:hba ?s_hba </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:rings ?s_rings </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:rotable_bonds ?s_rotable_bonds </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://rdf.ebi.ac.uk/dataset/surechembl/1.1/void.ttl#surechembl_rdf_molecule_dataset> .<br> ",
"tags": [
"Compound"
],
"parameters": [
{
"name": "uri",
"description": "A compound URI.",
"default": "http://www.conceptwiki.org/concept/38932552-111f-4a4e-a46a-4ed1d7bdf9d5",
"type": "string",
"required": true,
"in": "query"
},
{
"name": "app_id",
"description": "Your access application id",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_ids"
},
{
"name": "app_key",
"description": "Your access application key",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_keys"
},
{
"name": "_format",
"description": "The desired result format.",
"enum": [
"json",
"tsv",
"ttl",
"xml",
"rdf",
"rdfjson",
"html"
],
"type": "string",
"required": false,
"in": "query"
},
{
"name": "_callback",
"description": "For JSONP",
"type": "string",
"in": "query"
},
{
"name": "_metadata",
"description": "Additional metadata to be included with response.",
"enum": [
"execution",
"site",
"formats",
"views",
"all"
],
"type": "string",
"required": false,
"in": "query"
}
],
"responses": {
"200": {
"description": "OK"
},
"500": {
"description": "Internal server error"
}
}
}
},
"/compound/batch": {
"get": {
"summary": "Compound Information: Batch",
"description": "Information about compounds provided in a list sperated by '|'.<br><hr><br>Response template: <br><br><hr><br> ?ims_cw_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?compound_name </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.conceptwiki.org> </span> .<br> ?ims_ocrs_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:smiles ?smiles </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:inchi ?inchi </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:inchikey ?inchiKey </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:logp ?alogp </span> ;<br> ops:hb <span style=\"BACKGROUND-COLOR: #FFFFCC\"> a ?hba </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:hbd ?hbd </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:ro5_violations ?num_ro5_violations </span> ;<br> ops:ps <span style=\"BACKGROUND-COLOR: #FFFFCC\"> a ?psa </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:rtb ?rtb </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:molweight ?molweight </span> ;<br> ops:molformul <span style=\"BACKGROUND-COLOR: #FFFFCC\"> a ?molformula </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://chemistry.openphacts.org> </span> .<br> ?ims_chembl_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ?bNode1 ?mw_freebase </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> a ?mol_type </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.ebi.ac.uk/chembl> </span> .<br> ?ims_db_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:biotransformation ?biotransformation </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:description ?description </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:proteinBinding ?proteinBinding </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:toxicity ?toxicity </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:meltingPoint ?meltingPoint </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFCC99\"> ops:drugInteraction ?interaction </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.openphacts.org/bio2rdf/drugbank> </span> .<br> ?interaction <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:interactingDrug ?interacting_drug </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> drugbank:text ?interaction_text </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.openphacts.org/bio2rdf/drugbank> </span> .<br> ?ims_schembl_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:smiles ?s_smiles </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:inchi ?s_inchi </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:inchiKey ?s_inchiKey </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:logp ?s_logp </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:molweight ?s_molweight </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:hbd ?s_hbd </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:hba ?s_hba </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:rings ?s_rings </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:rotable_bonds ?s_rotable_bonds </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://rdf.ebi.ac.uk/dataset/surechembl/1.1/void.ttl#surechembl_rdf_molecule_dataset> .<br> ",
"tags": [
"Compound"
],
"parameters": [
{
"name": "uri_list",
"description": "A list of compound URIs separated by '|' characters",
"default": "http://www.conceptwiki.org/concept/38932552-111f-4a4e-a46a-4ed1d7bdf9d5|http://www.conceptwiki.org/concept/dd758846-1dac-4f0d-a329-06af9a7fa413",
"type": "string",
"required": true,
"in": "query"
},
{
"name": "app_id",
"description": "Your access application id",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_ids"
},
{
"name": "app_key",
"description": "Your access application key",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_keys"
},
{
"name": "_format",
"description": "The desired result format.",
"enum": [
"json",
"tsv",
"ttl",
"xml",
"rdf",
"rdfjson",
"html"
],
"type": "string",
"required": false,
"in": "query"
},
{
"name": "_callback",
"description": "For JSONP",
"type": "string",
"in": "query"
},
{
"name": "_metadata",
"description": "Additional metadata to be included with response.",
"enum": [
"execution",
"site",
"formats",
"views",
"all"
],
"type": "string",
"required": false,
"in": "query"
}
],
"responses": {
"200": {
"description": "OK"
},
"500": {
"description": "Internal server error"
}
}
}
},
"/compound/members/count": {
"get": {
"summary": "Compound Class Members: Count",
"description": "The number of compounds classified with the given class in the supported hierarchies. Currently the only supported hierarchy is the ChEBI Ontology.<br><hr><br>Response template: <br><br><hr><br> ?ops_item <span style=\"BACKGROUND-COLOR: #66FFCC\"> ops:memberCount ?count </span> .<br> ",
"tags": [
"Compound"
],
"parameters": [
{
"name": "uri",
"description": "A class URI from one of the supported hierarchies.",
"default": "http://purl.obolibrary.org/obo/CHEBI_24431",
"type": "string",
"required": true,
"in": "query"
},
{
"name": "app_id",
"description": "Your access application id",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_ids"
},
{
"name": "app_key",
"description": "Your access application key",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_keys"
},
{
"name": "_format",
"description": "The desired result format.",
"enum": [
"json",
"tsv",
"ttl",
"xml",
"rdf",
"rdfjson",
"html"
],
"type": "string",
"required": false,
"in": "query"
},
{
"name": "_callback",
"description": "For JSONP",
"type": "string",
"in": "query"
},
{
"name": "_metadata",
"description": "Additional metadata to be included with response.",
"enum": [
"execution",
"site",
"formats",
"views",
"all"
],
"type": "string",
"required": false,
"in": "query"
}
],
"responses": {
"200": {
"description": "OK"
},
"500": {
"description": "Internal server error"
}
}
}
},
"/compound/members/pages": {
"get": {
"summary": "Compound Class Members: List",
"description": "A list of compounds classified with the given class in the supported hierarchies. Currently the only supported hierarchy is the ChEBI Ontology.<br><hr><br>Response template: <br><br><hr><br> ?item <span style=\"BACKGROUND-COLOR: #FFCC99\"> skos:exactMatch ?compound_ocrs </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFCC99\"> skos:exactMatch ?compound_cw </span> .<br> ?compound_cw <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?compound_name</span>.",
"tags": [
"Compound"
],
"parameters": [
{
"name": "uri",
"description": "A class URI from one of the supported hierarchies.",
"type": "string",
"default": "http://purl.obolibrary.org/obo/CHEBI_24431",
"required": true,
"in": "query"
},
{
"name": "app_id",
"description": "Your access application id",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_ids"
},
{
"name": "app_key",
"description": "Your access application key",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_keys"
},
{
"name": "_page",
"description": "A number; the page that should be viewed",
"type": "integer",
"in": "query"
},
{
"name": "_pageSize",
"description": "The desired page size. Set to all to retrieve all results in a single page. Default: 10.",
"type": "string",
"required": false,
"in": "query"
},
{
"name": "_orderBy",
"description": "The desired variable to sort by. Multiple values can be specified seperated by spaces. Direction of sort can be specified with ASC(?var) and DESC(?var). Default is ascending",
"enum": [
"?child_node",
"DESC(?child_node)",
"?compound_name",
"DESC(?compound_name)",
"?cw_compound",
"DESC(?cw_compound)",
"?item",
"DESC(?item)",
"?node_uri",
"DESC(?node_uri)",
"?ocrs_compound",
"DESC(?ocrs_compound)"
],
"type": "string",
"required": false,
"in": "query"
},
{
"name": "_format",
"description": "The desired result format.",
"enum": [
"json",
"tsv",
"ttl",
"xml",
"rdf",
"rdfjson",
"html"
],
"type": "string",
"required": false,
"in": "query"
},
{
"name": "_callback",
"description": "For JSONP",
"type": "string",
"in": "query"
},
{
"name": "_metadata",
"description": "Additional metadata to be included with response.",
"enum": [
"execution",
"site",
"formats",
"views",
"all"
],
"type": "string",
"required": false,
"in": "query"
}
],
"responses": {
"200": {
"description": "OK"
},
"500": {
"description": "Internal server error"
}
}
}
},
"/compound/classifications": {
"get": {
"summary": "Compound Classifications",
"description": "The classes the given compound URI has been classified with. Currently supported hierarchies are the ChEBI Ontology and the Gene Ontology. <br><hr><br>Response template: <br><br><hr><br> ?ops_item <span style=\"BACKGROUND-COLOR: #A9A9F5\"> skos:exactMatch ?chembl_compound_uri </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFCC99\"> skos:exactMatch ?cw_compound_uri </span> .<br> ?chembl_compound_uri <span style=\"BACKGROUND-COLOR: #A9A9F5\"> ops:hasChebiClassification ?chebi_class </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFCC99\"> ops:hasChebiClassification ?chebi_other_class </span> ;<br> <span style=\"BACKGROUND-COLOR: #66FFCC\"> void:inDataset <http://www.ebi.ac.uk/chembl> </span> .<br> ?chebi_input <span style=\"BACKGROUND-COLOR: #FFCC99\"> ops:hasGoClassification ?go_class </span> ;<br> <span style=\"BACKGROUND-COLOR: #66FFCC\"> skos:prefLabel ?chebi_input_label </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.geneontology.org> </span> .<br> ?go_input <span style=\"BACKGROUND-COLOR: #FFCC99\"> ops:hasChebiClassification ?chebi_class </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?go_input_label </span> ;<br> <span style=\"BACKGROUND-COLOR: #66FFCC\"> void:inDataset <http://www.ebi.ac.uk/chembl> </span> .<br> ?cw_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?cw_label </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.conceptwiki.org> </span> .<br> ?chebi_class <span style=\"BACKGROUND-COLOR: #66FFCC\"> skos:prefLabel ?chebi_label </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:classificationType rdf:type </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.ebi.ac.uk/chebi> </span> .<br> rdf:type <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel 'Type' </span> .<br> ?chebi_other_class <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?chebi_other_label </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> ops:classificationType ?chebi_class_type </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.ebi.ac.uk/chebi> </span> .<br> ?chebi_class_type <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?chebi_class_type_label </span> .<br> ?go_class <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?go_label </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.geneontology.org> </span> .<br> <http://www.ebi.ac.uk/chebi> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel 'ChEBI Ontology' </span> .<br> <http://www.geneontology.org> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel 'GeneOntology' </span> .<br> ",
"tags": [
"Compound"
],
"parameters": [
{
"name": "uri",
"description": "A compound URI",
"default": "http://www.conceptwiki.org/concept/38932552-111f-4a4e-a46a-4ed1d7bdf9d5",
"type": "string",
"required": true,
"in": "query"
},
{
"name": "app_id",
"description": "Your access application id",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_ids"
},
{
"name": "app_key",
"description": "Your access application key",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_keys"
},
{
"name": "tree",
"description": "Restrict results by hierarchy.",
"required": false,
"enum": [
"chebi",
"go"
],
"in": "query",
"type": "string"
},
{
"name": "_format",
"description": "The desired result format.",
"enum": [
"json",
"tsv",
"ttl",
"xml",
"rdf",
"rdfjson",
"html"
],
"type": "string",
"required": false,
"in": "query"
},
{
"name": "_callback",
"description": "For JSONP",
"type": "string",
"in": "query"
},
{
"name": "_metadata",
"description": "Additional metadata to be included with response.",
"enum": [
"execution",
"site",
"formats",
"views",
"all"
],
"type": "string",
"required": false,
"in": "query"
}
],
"responses": {
"200": {
"description": "OK"
},
"500": {
"description": "Internal server error"
}
}
}
},
"/compound/classificationsForTargets": {
"get": {
"summary": "Classification of Targets for Compound",
"description": "The hierarchy of classes for the different Targets that interact with a given Compound. Currently supported hierarchies are the Enzyme Classification, the ChEMBL Target Tree and the Gene Ontology. <br><hr><br>Response template: <br><br><hr><br> ?ops_item <span style=\"BACKGROUND-COLOR: #A9A9F5\"> skos:exactMatch ?chembl_compound_uri </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFCC99\"> skos:exactMatch ?cw_compound_uri </span> .<br> ?chembl_compound_uri <span style=\"BACKGROUND-COLOR: #A9A9F5\"> ops:interactsWithTargetOfClass ?class </span> ;<br> <span style=\"BACKGROUND-COLOR: #66FFCC\"> void:inDataset <http://www.ebi.ac.uk/chembl> </span> .<br> ?cw_compound_uri <span style=\"BACKGROUND-COLOR: #FFFFCC\"> skos:prefLabel ?cw_label </span> ;<br> <span style=\"BACKGROUND-COLOR: #FFFFCC\"> void:inDataset <http://www.conceptwiki.org> </span> .<br> ?class <span style=\"BACKGROUND-COLOR: #66FFCC\"> skos:prefLabel ?class_label </span> ;<br> <span style=\"BACKGROUND-COLOR: #66FFCC\"> void:inDataset ?g </span> .<br> ",
"tags": [
"Compound"
],
"parameters": [
{
"name": "uri",
"description": "A compound URI.",
"default": "http://chemistry.openphacts.org/OPS6958",
"type": "string",
"required": true,
"in": "query"
},
{
"name": "app_id",
"description": "Your access application id",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_ids"
},
{
"name": "app_key",
"description": "Your access application key",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_keys"
},
{
"name": "tree",
"description": "Restrict results by hierarchy. Currently one of 'chembl', 'enzyme', 'go'",
"required": false,
"enum": [
"chembl",
"enzyme",
"go"
],
"in": "query",
"type": "string"
},
{
"name": "target_organism",
"description": "A literal target organism in ChEMBL.",
"in": "query",
"type": "string"
},
{
"name": "activity_type",
"description": "One of the activity types listed at /pharmacology/filters/activities",
"in": "query",
"type": "string"
},
{
"name": "activity_value",
"description": "Return activity values equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "min-activity_value",
"description": "Return activity values greater than or equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "minEx-activity_value",
"description": "Return activity values greater than this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "max-activity_value",
"description": "Return activity values less than or equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "maxEx-activity_value",
"description": "Return activity values less than this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "activity_unit",
"required": false,
"enum": [
"centimeter",
"day",
"degree_celsius",
"gram",
"gram_per_liter",
"hour",
"international_unit_per_liter",
"kilogram",
"liter",
"microgram_per_milliliter",
"micrometer",
"micromolar",
"milligram_per_deciliter",
"milligram_per_milliliter",
"millimeter",
"millimolar",
"milli_second",
"minute_time",
"molar",
"nanogram_per_milliliter",
"nanomolar",
"percent",
"picogram_per_milliliter",
"picomolar",
"second_time"
],
"description": "The unit in which {activity_value} is given. See /pharmacology/filters/units/pages?activity_type={activity_type} for allowed values. For e.g. IC50: /pharmacology/filters/units/pages?activity_type=IC50",
"in": "query",
"type": "string"
},
{
"name": "activity_relation",
"description": "The relation reported. e.g. '>' for IC50 > X",
"required": false,
"enum": [
">",
">=",
"=",
"<",
"<="
],
"in": "query",
"type": "string"
},
{
"name": "assay_organism",
"description": "A literal organism in ChEMBL.",
"in": "query",
"type": "string"
},
{
"name": "pChembl",
"description": "Return activities with a pChembl value equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "min-pChembl",
"description": "Return activities with a pChembl value greater than or equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "minEx-pChembl",
"description": "Return activities with a pChembl value greater than this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "max-pChembl",
"description": "Return activities with a pChembl value less than or equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "maxEx-pChembl",
"description": "Return activities with a pChembl value less than this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "_format",
"description": "The desired result format.",
"enum": [
"json",
"tsv",
"ttl",
"xml",
"rdf",
"rdfjson",
"html"
],
"type": "string",
"required": false,
"in": "query"
},
{
"name": "_callback",
"description": "For JSONP",
"type": "string",
"in": "query"
},
{
"name": "_metadata",
"description": "Additional metadata to be included with response.",
"enum": [
"execution",
"site",
"formats",
"views",
"all"
],
"type": "string",
"required": false,
"in": "query"
}
],
"responses": {
"200": {
"description": "OK"
},
"500": {
"description": "Internal server error"
}
}
}
},
"/compound/pharmacology/count": {
"get": {
"summary": "Compound Pharmacology: Count",
"description": "Returns the total number of activity values in the linked data cache (LDC) for a user specified compound. Filtering of results is possible via a variety of options such as: target organism, activity type, activity value, etc.<br><hr><br>Response template: <br><br><hr><br> ?ops_item <span style=\"BACKGROUND-COLOR: #66FFCC\"> ops:compoundPharmacologyTotalResults ?count </span> .<br> ",
"tags": [
"Compound"
],
"parameters": [
{
"name": "uri",
"description": "A compound URI.",
"default": "http://www.conceptwiki.org/concept/38932552-111f-4a4e-a46a-4ed1d7bdf9d5",
"type": "string",
"required": true,
"in": "query"
},
{
"name": "app_id",
"description": "Your access application id",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_ids"
},
{
"name": "app_key",
"description": "Your access application key",
"required": true,
"type": "string",
"in": "query",
"x-data-threescale-name": "app_keys"
},
{
"name": "assay_organism",
"description": "A literal organism in ChEMBL.",
"in": "query",
"type": "string"
},
{
"name": "target_organism",
"description": "A literal target organism in ChEMBL.",
"in": "query",
"type": "string"
},
{
"name": "activity_type",
"description": "One of the activity types listed at /pharmacology/filters/activities",
"in": "query",
"type": "string"
},
{
"name": "activity_value",
"description": "Return activity values equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "min-activity_value",
"description": "Return activity values greater than or equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "minEx-activity_value",
"description": "Return activity values greater than this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "max-activity_value",
"description": "Return activity values less than or equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "maxEx-activity_value",
"description": "Return activity values less than this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "activity_unit",
"required": false,
"enum": [
"centimeter",
"day",
"degree_celsius",
"gram",
"gram_per_liter",
"hour",
"international_unit_per_liter",
"kilogram",
"liter",
"microgram_per_milliliter",
"micrometer",
"micromolar",
"milligram_per_deciliter",
"milligram_per_milliliter",
"millimeter",
"millimolar",
"milli_second",
"minute_time",
"molar",
"nanogram_per_milliliter",
"nanomolar",
"percent",
"picogram_per_milliliter",
"picomolar",
"second_time"
],
"description": "The unit in which {activity_value} is given. See /pharmacology/filters/units/pages?activity_type={activity_type} for allowed values. For e.g. IC50: /pharmacology/filters/units/pages?activity_type=IC50",
"in": "query",
"type": "string"
},
{
"name": "activity_relation",
"description": "The relation reported. e.g. '>' for IC50 > X",
"required": false,
"enum": [
">",
">=",
"=",
"<",
"<="
],
"in": "query",
"type": "string"
},
{
"name": "pChembl",
"description": "Return activities with a pChembl value equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "min-pChembl",
"description": "Return activities with a pChembl value greater than or equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "minEx-pChembl",
"description": "Return activities with a pChembl value greater than this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "max-pChembl",
"description": "Return activities with a pChembl value less than or equal to this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "maxEx-pChembl",
"description": "Return activities with a pChembl value less than this number.",
"type": "number",
"format": "double",
"in": "query"
},
{
"name": "target_type",
"description": "One of the types listed at /target/types.",
"required": false,
"enum": [
"admet",
"chimeric_protein",
"nucleic_acid",
"organism",
"phenotype",
"ppi",
"protein_complex",
"protein_complex_group",
"protein_family",
"protein_selectivity_group",
"single_protein",
"sub_cellular",
"tissue",
"unclassified",
"unknown"
],
"in": "query",
"type": "string"
},
{
"name": "data_validity_issue",
"description": "ChEMBL data validity issue annotation. One of: true, false.",
"required": false,
"enum": [
"true",
"false"
],
"in": "query",
"type": "boolean"
},
{
"name": "data_validity_comment",
"description": "ChEMBL data validity issue annotation. One of: 'Manually validated', 'Non standard unit for type','Outside typical range' ,'Potential missing data', 'Potential transcription error', 'Potential author error', 'Author confirmed error'.",
"required": false,