diff --git a/cect/Analysis.py b/cect/Analysis.py
index b52cef585..debae4d61 100644
--- a/cect/Analysis.py
+++ b/cect/Analysis.py
@@ -5,15 +5,21 @@
def test_bilaterals():
- from cect.White_whole import get_instance
+ from cect.BrittinDataReader import get_instance
"""
- from cect.TestDataReader import get_instance
+ from cect.White_whole import get_instance
+ from cect.WormNeuroAtlasMAReader import get_instance
+ from cect.WormNeuroAtlasFuncReader import get_instance
from cect.Cook2019HermReader import get_instance
from cect.Cook2019MaleReader import get_instance
+ from cect.WitvlietDataReader1 import get_instance
+ from cect.WitvlietDataReader8 import get_instance
+ from cect.RipollSanchezDataReader import get_instance
+ from cect.TestDataReader import get_instance
from cect.Cook2020DataReader import get_instance
- from cect.ConnectomeView import NONPHARYNGEAL_NEURONS_VIEW as view
- from cect.ConnectomeView import PHARYNX_VIEW as view"""
+ from cect.ConnectomeView import PHARYNX_VIEW as view
+ from cect.ConnectomeView import NONPHARYNGEAL_NEURONS_VIEW as view"""
from cect.ConnectomeView import NEURONS_VIEW as view
print(
@@ -52,19 +58,27 @@ def array_info(conn_array):
new_conn_array = np.zeros([dim, dim], dtype=np.float64)
array_info(new_conn_array)
- for synclass in ["Chemical Exc", "Electrical"]:
+ for synclass in [
+ "Chemical Exc",
+ "Electrical",
+ "Contact",
+ "Functional",
+ "Extrasynaptic",
+ ]:
print(" Adding conns of type: %s" % synclass)
conns_cs = cds2.connections[synclass]
array_info(conns_cs)
for i in range(len(conns_cs)):
for j in range(len(conns_cs[i])):
- new_conn_array[i, j] = new_conn_array[i, j] or conns_cs[i, j] > 0
+ if (
+ i != j
+ ): # Kim et al 2024: Self-connections are treated as nonexistent (∀𝐴𝑖𝑖 = 0).
+ new_conn_array[i, j] = new_conn_array[i, j] or conns_cs[i, j] > 0
amal = "CS+GJ"
print("Amalgamated array:")
array_info(new_conn_array)
- cds2.connections[amal] = new_conn_array
# fig = cds2.to_plotly_hive_plot_fig(list(view.synclass_sets.keys())[0], view)
# fig = cds2.to_plotly_graph_fig(synclass, view)
@@ -73,7 +87,12 @@ def array_info(conn_array):
conn_count = 0
symm_conn_count = 0
- POS_NEG_COLORMAP2 = ["red", "pink", "white", "lightblue", "blue"]
+ POS_ZERO_NEG_COLORMAP2 = ["red", "pink", "white", "lightblue", "blue"]
+ POS_ZERO_COLORMAP2 = ["white", "lightblue", "blue"]
+
+ colormap = POS_ZERO_COLORMAP2
+
+ scaled_conn_array = np.array(new_conn_array)
for i in range(len(new_conn_array)):
pre = cds2.nodes[i]
@@ -84,26 +103,30 @@ def array_info(conn_array):
w = new_conn_array[i][j]
if w != 0:
print(f"Connection {conn_count}:\t{pre}->{post} ({w})")
+ assert pre is not post
w_ = new_conn_array[cds2.nodes.index(pre_), cds2.nodes.index(post_)]
print(f" - Mirror:\t{pre_}->{post_} ({w_})\n")
symm_conn_count += w_
if w_ == 0:
- new_conn_array[i][j] = 0.5
- new_conn_array[cds2.nodes.index(pre_), cds2.nodes.index(post_)] = -1
+ scaled_conn_array[i][j] = 0.5
+ scaled_conn_array[
+ cds2.nodes.index(pre_), cds2.nodes.index(post_)
+ ] = -1
+ colormap = POS_ZERO_NEG_COLORMAP2
conn_count += 1
print(
f"Of {(len(new_conn_array)**2)} possible edges, {conn_count} are connected, {symm_conn_count} are mirrored {'%.2f'%(100*symm_conn_count/conn_count)}% "
)
+ cds2.connections[amal] = scaled_conn_array
+
# import plotly.io as pio
# pio.renderers.default = "browser"
if "-nogui" not in sys.argv:
# cds2.connection_number_plot
- fig = cds2.to_plotly_matrix_fig(
- amal, view, POS_NEG_COLORMAP2, bold_bilaterals=True
- )
+ fig = cds2.to_plotly_matrix_fig(amal, view, colormap, bold_bilaterals=True)
fig.show()
diff --git a/cect/BrittinDataReader.py b/cect/BrittinDataReader.py
index 4a750a5d7..cce8b3c94 100644
--- a/cect/BrittinDataReader.py
+++ b/cect/BrittinDataReader.py
@@ -12,6 +12,8 @@
from cect.ConnectomeDataset import ConnectomeDataset
from cect.ConnectomeDataset import get_dataset_source_on_github
+from cect.Cells import is_one_of_bilateral_pair
+from cect.Cells import get_contralateral_neuron
import os
from openpyxl import load_workbook
@@ -40,7 +42,7 @@ def __init__(self, reference_graph):
cells, neuron_conns = self.read_data()
for conn in neuron_conns:
- self.add_connection_info(conn)
+ self.add_connection_info(conn, check_overwritten_connections=True)
def read_data(self):
cells = []
@@ -50,6 +52,9 @@ def read_data(self):
sheet = wb.get_sheet_by_name(self.reference_graph)
+ bilaterals = []
+ single_cells = []
+
print_("Opened sheet %s in Excel file: %s" % (sheet, filename))
# print(dir(sheet))
@@ -64,8 +69,10 @@ def read_data(self):
syntype = "Contact"
synclass = "%s%s" % (self.reference_graph, row[3].value)
synclass = "Contact"
+
ci = ConnectionInfo(pre, post, num, syntype, synclass)
- # print("Adding %s" % ci)
+ conns.append(ci)
+ ci = ConnectionInfo(post, pre, num, syntype, synclass)
conns.append(ci)
if pre not in cells:
@@ -73,6 +80,29 @@ def read_data(self):
if post not in cells:
cells.append(post)
+ pre_ = get_contralateral_neuron(pre)
+ post_ = get_contralateral_neuron(post)
+ ci_ = ConnectionInfo(pre_, post_, num, syntype, synclass)
+ conns.append(ci_)
+ ci_ = ConnectionInfo(post_, pre_, num, syntype, synclass)
+ conns.append(ci_)
+
+ if pre_ not in cells:
+ cells.append(pre_)
+ if post_ not in cells:
+ cells.append(post_)
+
+ for cell in cells:
+ if is_one_of_bilateral_pair(cell):
+ bilaterals.append(cell)
+ else:
+ single_cells.append(cell)
+
+ print_(
+ "Finished processing %i cells, %i bilateral and %i single cells: %s"
+ % (len(cells), len(bilaterals), len(single_cells), sorted(single_cells))
+ )
+
return cells, conns
diff --git a/cect/CellInfo.py b/cect/CellInfo.py
index fd8a4ed45..9d0e6f242 100644
--- a/cect/CellInfo.py
+++ b/cect/CellInfo.py
@@ -263,8 +263,7 @@ def generate_cell_info_pages(connectomes):
conns_to_pep = "???"
conns_from_func = "???"
conns_to_func = "???"
- conns_from_cont = "???"
- conns_to_cont = "???"
+ conns_cont = "???"
conns_gj = "???"
tables_md = ""
@@ -304,7 +303,7 @@ def generate_cell_info_pages(connectomes):
if cds_name == reference_func:
conns_to_func = _get_top_list(conns, max_conn_cells)
if cds_name == reference_cont:
- conns_to_cont = _get_top_list(conns, max_conn_cells)
+ conns_cont = _get_top_list(conns, max_conn_cells)
for c in conns:
cc = get_cell_internal_link(
@@ -353,7 +352,7 @@ def generate_cell_info_pages(connectomes):
if cds_name == reference_func:
conns_from_func = _get_top_list(conns, max_conn_cells)
if cds_name == reference_cont:
- conns_from_cont = _get_top_list(conns, max_conn_cells)
+ pass # same as to...
for c in conns:
cc = get_cell_internal_link(
@@ -402,7 +401,7 @@ def generate_cell_info_pages(connectomes):
| | \u2195 |
- | Contactomic | IN: {conns_to_cont}
OUT: {conns_from_cont} |
+ Contactomic | {conns_cont} |
diff --git a/cect/ConnectomeDataset.py b/cect/ConnectomeDataset.py
index 9cf122444..d06ca0a8f 100644
--- a/cect/ConnectomeDataset.py
+++ b/cect/ConnectomeDataset.py
@@ -7,6 +7,7 @@
from cect.Cells import get_standard_color
from cect.Cells import is_bilateral_left
from cect.Cells import is_bilateral_right
+from cect.Cells import is_one_of_bilateral_pair
from cect.Cells import are_bilateral_pair
from cect.Cells import SENSORY_NEURONS_NONPHARYNGEAL_COOK
from cect.Cells import INTERNEURONS_NONPHARYNGEAL_COOK
@@ -16,6 +17,7 @@
from cect.Cells import is_known_muscle
from cect.Cells import is_pharyngeal_cell
from cect.Cells import is_known_cell
+from cect.Cells import get_SIM_class
import numpy as np
import math
@@ -24,8 +26,6 @@
import pprint
import random
-from cect.Cells import get_SIM_class
-
random.seed(10)
@@ -101,7 +101,9 @@ def to_networkx_graph(self, synclass, view=None):
return Gn
- def add_connection_info(self, conn: ConnectionInfo):
+ def add_connection_info(
+ self, conn: ConnectionInfo, check_overwritten_connections: bool = False
+ ):
if self.verbose:
print_("---- Adding: %s" % conn)
@@ -131,6 +133,26 @@ def add_connection_info(self, conn: ConnectionInfo):
pre_index = self.nodes.index(conn.pre_cell)
post_index = self.nodes.index(conn.post_cell)
+ if conn_array[pre_index, post_index] != 0:
+ print_(
+ "Preexisting connection (%i conns already) at (%i,%i) - %s..."
+ % (len(self.connection_infos), pre_index, post_index, conn)
+ )
+ if conn_array[pre_index, post_index] != conn.number:
+ info = (
+ " *** Existing connection at (%i,%i), was: %s, setting to: %s"
+ % (
+ pre_index,
+ post_index,
+ conn_array[pre_index, post_index],
+ conn.number,
+ )
+ )
+ if check_overwritten_connections:
+ raise Exception(info)
+ else:
+ print_(info)
+
conn_array[pre_index, post_index] = conn.number
if self.verbose:
@@ -320,9 +342,13 @@ def summary(self):
)
return info
- def to_plotly_matrix_fig(self, synclass, view, color_continuous_scale=None):
- import plotly.express as px
-
+ def to_plotly_matrix_fig(
+ self,
+ synclass: str,
+ view: str,
+ color_continuous_scale: bool = None,
+ bold_bilaterals: bool = False,
+ ):
conn_array = self.connections[synclass]
zmin = np.min(conn_array)
@@ -345,12 +371,15 @@ def to_plotly_matrix_fig(self, synclass, view, color_continuous_scale=None):
)
def get_color_html(color, node):
- return f'{node}'
+ font_weight = ""
+ if bold_bilaterals and is_one_of_bilateral_pair(node):
+ font_weight = "font-weight:bold;"
+ return f'{node}'
node_colors = [
(
view.get_node_set(node).color
- if view.has_color()
+ if view is not None and view.has_color()
else get_standard_color(node)
)
for node in self.nodes
@@ -363,6 +392,8 @@ def get_color_html(color, node):
get_color_html(color, node) for node, color in zip(self.nodes, node_colors)
]
+ import plotly.express as px
+
fig = px.imshow(
conn_array,
labels=dict(x="Postsynaptic", y="Presynaptic", color="Weight"),
@@ -392,7 +423,7 @@ def get_color_html(color, node):
other_line = False
for i, node_value in enumerate(self.nodes):
- if not view.get_node_set(node_value).is_one_cell():
+ if view is not None and not view.get_node_set(node_value).is_one_cell():
break
if not sens_line and node_value in SENSORY_NEURONS_NONPHARYNGEAL_COOK:
diff --git a/docs/Cells.md b/docs/Cells.md
index 3ca6e677e..399d8729f 100644
--- a/docs/Cells.md
+++ b/docs/Cells.md
@@ -526,7 +526,7 @@ title: C. elegans cells
| PVPL | Layer 3 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/PVPframeset.html)
OSB 3D |
| PVPR | Layer 3 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/PVPframeset.html)
OSB 3D |
| PVQL | Layer 3 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/PVQframeset.html)
OSB 3D |
-| PVQR | Layer 3 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/PVQframeset.html)
OSB 3D |
+| PVQR | Layer 3 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/PVQframeset.html)
OSB 3D |
| PVR | Layer 3 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/PVRframeset.html)
OSB 3D |
| PVT | Layer 2 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/PVTframeset.html)
OSB 3D |
| PVV | Male interneuron | [Cook2019Male](Cook2019Male_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/PVVframeset.html)
|
@@ -550,7 +550,7 @@ title: C. elegans cells
| RIML | Layer 1 interneuron; motorneuron in White et al., 1986 | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/RIMframeset.html)
OSB 3D |
| RIMR | Layer 1 interneuron; motorneuron in White et al., 1986 | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/RIMframeset.html)
OSB 3D |
| RIPL | Linker to pharynx | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Cook2020](Cook2020_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/RIPframeset.html)
OSB 3D |
-| RIPR | Linker to pharynx | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Cook2020](Cook2020_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/RIPframeset.html)
OSB 3D |
+| RIPR | Linker to pharynx | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Cook2020](Cook2020_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/RIPframeset.html)
OSB 3D |
| RIR | Category 4 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/RIRframeset.html)
OSB 3D |
| RIS | Layer 3 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/RISframeset.html)
OSB 3D |
| RMFL | Layer 2 interneuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/RMFframeset.html)
OSB 3D |
@@ -672,7 +672,7 @@ title: C. elegans cells
| SMDVL | Sublateral motor neuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/SMDframeset.html)
OSB 3D |
| SMDVR | Sublateral motor neuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/SMDframeset.html)
OSB 3D |
| URADL | Head motor neuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/URAframeset.html)
OSB 3D |
-| URADR | Head motor neuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/URAframeset.html)
OSB 3D |
+| URADR | Head motor neuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/URAframeset.html)
OSB 3D |
| URAVL | Head motor neuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/URAframeset.html)
OSB 3D |
| URAVR | Head motor neuron | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/URAframeset.html)
OSB 3D |
| VA1 | Ventral cord motor neuron | [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/VAframeset.html)
OSB 3D |
@@ -764,7 +764,7 @@ title: C. elegans cells
| ASEL | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/ASEframeset.html)
OSB 3D |
| ASER | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/ASEframeset.html)
OSB 3D |
| ASGL | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/ASGframeset.html)
OSB 3D |
-| ASGR | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/ASGframeset.html)
OSB 3D |
+| ASGR | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/ASGframeset.html)
OSB 3D |
| ASHL | Amphid, nociceptive | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/ASHframeset.html)
OSB 3D |
| ASHR | Amphid, nociceptive | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md), [Test](Test_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/ASHframeset.html)
OSB 3D |
| ASIL | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/ASIframeset.html)
OSB 3D |
@@ -775,7 +775,7 @@ title: C. elegans cells
| ASKR | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md), [Test](Test_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/ASKframeset.html)
OSB 3D |
| AVM | Mechanosensory | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/AVMframeset.html)
OSB 3D |
| AWAL | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/AWAframeset.html)
OSB 3D |
-| AWAR | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/AWAframeset.html)
OSB 3D |
+| AWAR | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/AWAframeset.html)
OSB 3D |
| AWBL | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/AWBframeset.html)
OSB 3D |
| AWBR | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md), [Test](Test_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/AWBframeset.html)
OSB 3D |
| AWCL | Amphid | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/AWCframeset.html)
OSB 3D |
@@ -802,7 +802,7 @@ title: C. elegans cells
| IL1VL | Cephalic | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/IL1frameset.html)
OSB 3D |
| IL1VR | Cephalic | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/IL1frameset.html)
OSB 3D |
| IL2DL | Cephalic | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/IL2frameset.html)
OSB 3D |
-| IL2DR | Cephalic | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/IL2frameset.html)
OSB 3D |
+| IL2DR | Cephalic | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/IL2frameset.html)
OSB 3D |
| IL2L | Cephalic | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/IL2frameset.html)
OSB 3D |
| IL2R | Cephalic | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/IL2frameset.html)
OSB 3D |
| IL2VL | Cephalic | [White_A](White_A_data_graph.md), [White_L4](White_L4_data_graph.md), [White_whole](White_whole_data_graph.md), [Varshney](Varshney_data_graph.md), [Bentley2016_MA](Bentley2016_MA_data_graph.md), [Bentley2016_PEP](Bentley2016_PEP_data_graph.md), [Cook2019Herm](Cook2019Herm_data_graph.md), [Cook2019Male](Cook2019Male_data_graph.md), [Brittin2021](Brittin2021_data_graph.md), [Witvliet1](Witvliet1_data_graph.md), [Witvliet2](Witvliet2_data_graph.md), [Witvliet3](Witvliet3_data_graph.md), [Witvliet4](Witvliet4_data_graph.md), [Witvliet5](Witvliet5_data_graph.md), [Witvliet6](Witvliet6_data_graph.md), [Witvliet7](Witvliet7_data_graph.md), [Witvliet8](Witvliet8_data_graph.md), [WormNeuroAtlas](WormNeuroAtlas_data_graph.md), [Randi2023](Randi2023_data_graph.md), [RipollSanchezShortRange](RipollSanchezShortRange_data_graph.md), [RipollSanchezMidRange](RipollSanchezMidRange_data_graph.md), [RipollSanchezLongRange](RipollSanchezLongRange_data_graph.md), [SSData](SSData_data_graph.md), [UpdSSData](UpdSSData_data_graph.md), [UpdSSData2](UpdSSData2_data_graph.md) | [WormAtlas](https://www.wormatlas.org/neurons/Individual Neurons/IL2frameset.html)
OSB 3D |
diff --git a/docs/Comparison.md b/docs/Comparison.md
index 76b855c45..825805acb 100644
--- a/docs/Comparison.md
+++ b/docs/Comparison.md
@@ -300,18 +300,18 @@
Brittin et al. 2021
|
| ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
-⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
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+⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
+⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
+⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
| ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
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+⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
+⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
+⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
| ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
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-⬮ ⬮ ⬮
+⬮ ⬮ ⬮ ⬮
|
|
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@@ -493,7 +493,7 @@
| [Cook2019Herm](Cook2019Herm_data.md) | 302 | 0 | 36 | 119 | 5908 | 183 | 1084 | Gen_CS (3709)
Gen_GJ (2199)
| Gen_CS (1051)
Gen_GJ (33)
|
| [Cook2019Male](Cook2019Male_data.md) | 292 | 10 | 135 | 147 | 5923 | 209 | 1174 | Gen_CS (4048)
Gen_GJ (1875)
| Gen_CS (1134)
Gen_GJ (40)
|
| [Cook2020](Cook2020_data.md) | 22 | 280 | 21 | 19 | 456 | 20 | 218 | Gen_CS (336)
Gen_GJ (120)
| Gen_CS (176)
Gen_GJ (42)
|
-| [Brittin2021](Brittin2021_data.md) | 167 | 135 | 0 | 0 | 1258 | 0 | 0 | Contact (1258)
| |
+| [Brittin2021](Brittin2021_data.md) | 173 | 129 | 0 | 0 | 5032 | 0 | 0 | Contact (5032)
| |
| [Witvliet1](Witvliet1_data.md) | 161 | 141 | 9 | 17 | 841 | 33 | 78 | Gen_CS (675)
Gen_GJ (166)
| Gen_CS (78)
|
| [Witvliet2](Witvliet2_data.md) | 162 | 140 | 11 | 21 | 1107 | 32 | 91 | Gen_CS (865)
Gen_GJ (242)
| Gen_CS (91)
|
| [Witvliet3](Witvliet3_data.md) | 162 | 140 | 9 | 27 | 1075 | 35 | 100 | Gen_CS (887)
Gen_GJ (188)
| Gen_CS (100)
|
diff --git a/docs/Comparison_table.html b/docs/Comparison_table.html
index 28322f4cd..925e6cf72 100644
--- a/docs/Comparison_table.html
+++ b/docs/Comparison_table.html
@@ -309,18 +309,18 @@
| Brittin et al. 2021
|
| ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
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| ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮ ⬮
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|
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diff --git a/docs/api/cect/Analysis.md b/docs/api/cect/Analysis.md
new file mode 100644
index 000000000..21fd48ecb
--- /dev/null
+++ b/docs/api/cect/Analysis.md
@@ -0,0 +1 @@
+::: cect.Analysis
diff --git a/docs/api/summary.md b/docs/api/summary.md
index 9fcd48de7..26b8a6591 100644
--- a/docs/api/summary.md
+++ b/docs/api/summary.md
@@ -1,4 +1,5 @@
* [cect](cect/index.md)
+ * [Analysis](cect/Analysis.md)
* [BrittinDataReader](cect/BrittinDataReader.md)
* [CellInfo](cect/CellInfo.md)
* [Cells](cect/Cells.md)
diff --git a/docs/assets/Test_Neurons_Chemical_Exc_graph.json b/docs/assets/Test_Neurons_Chemical_Exc_graph.json
index 32f5a41b5..81530bea8 100644
--- a/docs/assets/Test_Neurons_Chemical_Exc_graph.json
+++ b/docs/assets/Test_Neurons_Chemical_Exc_graph.json
@@ -11,12 +11,12 @@
"textposition": "middle center",
"type": "scatter",
"x": [
- -0.877932,
- -0.923915
+ -0.988656,
+ -0.986776
],
"y": [
- 0.00289,
- 0.028945
+ 0.129635,
+ 0.086008
]
},
{
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diff --git a/docs/assets/Test_Neurons_Electrical_graph.json b/docs/assets/Test_Neurons_Electrical_graph.json
index c77a7cd58..344268b0a 100644
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diff --git a/docs/assets/Test_Raw_Electrical_graph.png b/docs/assets/Test_Raw_Electrical_graph.png
index 3120b7d68..781c86fb7 100644
Binary files a/docs/assets/Test_Raw_Electrical_graph.png and b/docs/assets/Test_Raw_Electrical_graph.png differ
|