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    84 repositories

    • arvados

      Public
      An open source platform for managing and analyzing biomedical big data
      awsworkflowcloudbioinformaticsgenomicsazureworkflow-enginebigdatagcpcwl
      Go
      •
      Other
      •117•400•0•20•Updated Nov 12, 2024Nov 12, 2024

    • arvados-tutorial

      Public
      Common Workflow Language
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Nov 8, 2024Nov 8, 2024

    • arvados-dev

      Public
      Development tools for people who hack on arvados core
      Go
      •
      Other
      •3•3•0•2•Updated Nov 7, 2024Nov 7, 2024

    • cwlautodoc

      Public
      Python
      •0•2•2•0•Updated Oct 30, 2024Oct 30, 2024

    • arvados-formula

      Public
      A formula to install and configure [Arvados](https://arvados.org)
      SaltStack
      •
      Other
      •5•1•2•2•Updated Oct 15, 2024Oct 15, 2024

    • rnaseq-cwl-training

      Public
      HTML
      •
      Other
      •2•6•8•1•Updated Jun 22, 2024Jun 22, 2024

    • postgres-formula

      Public
      SaltStack
      •
      Other
      •282•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • gofakes3

      Public
      A simple fake AWS S3 object storage (used for local test-runs against AWS S3 APIs)
      Go
      •
      MIT License
      •84•0•0•0•Updated May 13, 2024May 13, 2024

    • aws-cli-cwl

      Public
      CWL workflow for bulk import from S3
      Common Workflow Language
      •
      Apache License 2.0
      •1•0•0•0•Updated May 9, 2024May 9, 2024

    • lightning

      Public
      Go
      •3•0•0•4•Updated May 7, 2024May 7, 2024

    • python-llfuse

      Public
      Python bindings for the low level FUSE API
      HTML
      •
      Other
      •29•0•0•0•Updated Apr 5, 2024Apr 5, 2024

    • arvados-workbench2

      Public archive
      TypeScript
      •
      Other
      •2•4•0•0•Updated Apr 5, 2024Apr 5, 2024

    • arvados-python-llfuse

      Public
      Imported from bitbucket.
      HTML
      •
      Other
      •0•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • amazon-ebs-autoscale

      Public
      Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.
      Shell
      •
      MIT License
      •59•0•0•0•Updated Mar 1, 2024Mar 1, 2024

    • awesome-workflow-engines

      Public
      A curated list of awesome open source workflow engines
      Apache License 2.0
      •636•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • arvados_cwl_tester

      Public
      Python
      •
      Apache License 2.0
      •1•1•0•1•Updated Nov 27, 2023Nov 27, 2023

    • cleanup-wf

      Public
      Workflow to automatically clean up intermediate and log files
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 26, 2023Oct 26, 2023

    • idle-test-wf

      Public
      Common Workflow Language
      •0•0•0•0•Updated Aug 23, 2023Aug 23, 2023

    • google-api-ruby-client

      Public
      Ruby
      •
      Apache License 2.0
      •871•0•0•1•Updated Aug 18, 2023Aug 18, 2023

    • bio-cwl-tools

      Public
      CWL CommandLineTool descriptions for biology/life-sciences related applications
      Common Workflow Language
      •
      Apache License 2.0
      •37•0•0•0•Updated Jul 5, 2023Jul 5, 2023

    • l7g

      Public archive
      Main repo for the Lightning system being developed by Curii.
      Go
      •
      GNU Affero General Public License v3.0
      •6•5•1•1•Updated Jun 7, 2023Jun 7, 2023

    • l7g-ml

      Public
      Machine Learning Work working with WGS data
      Jupyter Notebook
      •4•0•0•0•Updated Jan 26, 2023Jan 26, 2023

    • redmine_backlogs

      Public
      arvados.org fixes for https://github.com/TheMagician1/redmine_backlogs.git
      HTML
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • tapestry

      Public
      Ruby
      •
      Other
      •5•6•0•6•Updated Aug 11, 2022Aug 11, 2022

    • longupload

      Public
      Java
      •1•1•0•0•Updated Aug 11, 2022Aug 11, 2022

    • arvados-tes

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 15, 2022Jul 15, 2022

    • redmine_arvados

      Public
      Redmine plugin for dev.arvados.org customizations
      Ruby
      •0•0•0•0•Updated Jun 10, 2022Jun 10, 2022

    • composer

      Public
      Visual and code editor for Common Workflow Language
      TypeScript
      •
      Apache License 2.0
      •72•3•0•0•Updated Mar 16, 2022Mar 16, 2022

    • arvados-vscode-cwl-training

      Public
      Training for using Visual Studio Code to develop CWL workflows on Arvados
      Common Workflow Language
      •0•5•0•0•Updated Jan 24, 2022Jan 24, 2022

    • arvados-vscode-cwl-template

      Public template
      Template for using Visual Studio Code to develop CWL workflows on Arvados
      Shell
      •1•0•0•0•Updated Jan 24, 2022Jan 24, 2022