From 9beaf3e37d3749723f21256994491b285a6f7195 Mon Sep 17 00:00:00 2001 From: Ranum Date: Wed, 16 Dec 2020 11:54:27 -0500 Subject: [PATCH] Change number of versions --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index de59605..dce97ff 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,5 @@ -# SPLiT-Seq_demultiplexing_0.1.4 -This tool was created to provide an open source, portable solution for demultiplexing SPLiT-Seq RNA-Seq datasets. SPLiT-Seq_demultiplexing has two core versions: +# SPLiT-Seq_demultiplexing_0.2.1 +This tool was created to provide an open source, portable solution for demultiplexing SPLiT-Seq RNA-Seq datasets. SPLiT-Seq_demultiplexing has three core versions: 1. `--version merged` which produces one .fastq file in which CellID and UMI information is appended to the readID. 2. `--version split` which produces one .fastq file for each single-cell identified. Output .fastq files are named using the identified barcode combination and UMIs are appended to the readID. 3. `--version fast` which produces one .fastq file in which CellID and UMI information is appended to the readID. The `fast` version utilizes position based barcode extraction and multithreading to deliver massively faster results compared to the original `split` and `merged` configurations.