anaconda_linux.yml

name: Anaconda-Linux

on:
  workflow_dispatch:
    inputs:
      python_version:
        required: true
        type: string
      ref:
        required: false
        type: string
      check_run_id:
        required: false
        type: string
      pr_repo:
        required: false
        type: string
  push:
    branches: [devel, main]

env:
  COMMIT: ${{ inputs.ref || github.event.ref }}
  PEM: ${{ secrets.BOT_PEM }}
  GITHUB_RUN_ID: ${{ github.run_id }}
  GITHUB_CHECK_RUN_ID: ${{ inputs.check_run_id }}
  PR_REPO: ${{ inputs.pr_repo || github.repository }}

jobs:
  Python_version_picker:
    runs-on: ubuntu-latest
    if: github.event_name != 'push' || github.repository == 'pyccel/pyccel-cuda'
    outputs:
      python_version: ${{ steps.set-python_version.outputs.python_version }}
    steps:
    - if: github.event_name == 'push'
      run: |
        echo "version=3.9" >> $GITHUB_ENV
      shell: bash
    - id: dispatch-matrix
      if: github.event_name == 'workflow_dispatch'
      run: |
        echo "version=${{ inputs.python_version }}" >> $GITHUB_ENV
      shell: bash
    - id: set-python_version
      run: |
        echo "python_version=$version" >> $GITHUB_OUTPUT
      shell: bash

  Anaconda-Linux:
    runs-on: ubuntu-latest
    name: Unit tests
    needs: Python_version_picker

    steps:
      - uses: actions/checkout@v4
        with:
          ref: ${{ env.COMMIT }}
          repository: ${{ env.PR_REPO }}
          submodules: true
      - name: Install dependencies
        uses: ./.github/actions/linux_install
      - uses: conda-incubator/setup-miniconda@v2
        with:
          auto-update-conda: true
          auto-activate-base: true
          python-version: ${{ needs.Python_version_picker.outputs.python_version }}
      - name: Install python dependencies
        uses: ./.github/actions/conda_installation
        with:
          mpi_type: openmpi
      - name: "Setup"
        if: github.event_name != 'push'
        id: token
        run: |
          pip install jwt requests
          python ci_tools/setup_check_run.py anaconda_linux
        shell: bash -l {0}
      - name: Coverage install
        uses: ./.github/actions/coverage_install
        with:
          shell_cmd: "bash -l {0}"
      - name: Fortran/C tests with pytest
        id: f_c_pytest
        timeout-minutes: 60
        uses: ./.github/actions/pytest_run
        with:
          shell_cmd: "bash -l {0}"
      - name: Python tests with pytest
        id: python_pytest
        timeout-minutes: 20
        uses: ./.github/actions/pytest_run_python
        with:
          shell_cmd: "bash -l {0}"
      - name: Parallel tests with pytest
        id: parallel
        timeout-minutes: 20
        uses: ./.github/actions/pytest_parallel
        with:
          shell_cmd: "bash -l {0}"
      - name: Collect coverage information
        continue-on-error: True
        uses: ./.github/actions/coverage_collection
        with:
          shell_cmd: "bash -l {0}"
      - name: Save code coverage report
        uses: actions/upload-artifact@v4
        with:
          name: coverage-artifact
          path: .coverage
          retention-days: 1
          include-hidden-files: true
      - name: "Post completed"
        if: always() && github.event_name != 'push'
        run:
          python ci_tools/complete_check_run.py ${{ steps.f_c_pytest.outcome }} ${{ steps.python_pytest.outcome }} ${{ steps.parallel.outcome }}
        shell: bash -l {0}