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Breaking up type registration for windows compilation
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| /** | ||
| * @file | ||
| * This file contains the Workspace function that adds types and functions | ||
| * to the global workspace, registering them with the interpreter/compiler | ||
| * during the process. | ||
| * | ||
| * @brief Function registering language objects | ||
| * | ||
| * Instructions | ||
| * | ||
| * This is the central registry of Rev objects. It is a large file and needs | ||
| * to be properly organized to facilitate maintenance. Follow these simple | ||
| * guidelines to ensure that your additions follow the existing structure. | ||
| * | ||
| * 1. All headers are added in groups corresponding to directories in the | ||
| * revlanguage code base. | ||
| * 2. All objects (types, distributions, and functions) are registered in | ||
| * groups corresponding to directories in the revlanguage code base. | ||
| * 3. All entries in each group are listed in alphabetical order. | ||
| * | ||
| * Some explanation of the directory structure is provided in the comments | ||
| * in this file. Consult these comments if you are uncertain about where | ||
| * to add your objects in the code. | ||
| */ | ||
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| #include <sstream> | ||
| #include <vector> | ||
| #include <set> | ||
| #include <cstdlib> | ||
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| /* Files including helper classes */ | ||
| #include "AddContinuousDistribution.h" | ||
| #include "AddDistribution.h" | ||
| #include "AddWorkspaceVectorType.h" | ||
| #include "AddVectorizedWorkspaceType.h" | ||
| #include "RbException.h" | ||
| #include "RevAbstractType.h" | ||
| #include "RlUserInterface.h" | ||
| #include "Workspace.h" | ||
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| /// Miscellaneous types /// | ||
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| /* Base types (in folder "datatypes") */ | ||
| #include "RevObject.h" | ||
| #include "AbstractModelObject.h" | ||
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| /* Container types (in folder "datatypes/container") */ | ||
| #include "RlCorrespondenceAnalysis.h" | ||
| #include "RlMatrixReal.h" | ||
| #include "RlMatrixRealPos.h" | ||
| #include "RlMatrixRealSymmetric.h" | ||
| #include "RlRateGeneratorSequence.h" | ||
| #include "RlRateMatrix.h" | ||
| #include "RlSimplex.h" | ||
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| /* Container types (in folder "datatypes/math") */ | ||
| #include "ModelVector.h" | ||
| #include "WorkspaceVector.h" | ||
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| /* Container types (in folder "distributions/phylogenetics") */ | ||
| #include "Dist_bdp.h" | ||
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| /* Evolution types (in folder "datatypes/phylogenetics") */ | ||
| #include "RlDistanceMatrix.h" | ||
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| /* Character state types (in folder "datatypes/phylogenetics/character") */ | ||
| #include "RlAminoAcidState.h" | ||
| #include "RlDnaState.h" | ||
| #include "RlRnaState.h" | ||
| #include "RlStandardState.h" | ||
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| /* Character data types (in folder "datatypes/phylogenetics/datamatrix") */ | ||
| #include "RlAbstractCharacterData.h" | ||
| #include "RlAbstractHomologousDiscreteCharacterData.h" | ||
| #include "RlContinuousCharacterData.h" | ||
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| /* Tree types (in folder "datatypes/phylogenetics/trees") */ | ||
| #include "RlClade.h" | ||
| #include "RlRootedTripletDistribution.h" | ||
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| /* Taxon types (in folder "datatypes/phylogenetics") */ | ||
| #include "RlTaxon.h" | ||
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| /* Inference types (in folder "analysis") */ | ||
| #include "RlBootstrapAnalysis.h" | ||
| #include "RlBurninEstimationConvergenceAssessment.h" | ||
| #include "RlHillClimber.h" | ||
| #include "RlMcmc.h" | ||
| #include "RlMcmcmc.h" | ||
| #include "RlModel.h" | ||
| #include "RlPathSampler.h" | ||
| #include "RlPosteriorPredictiveAnalysis.h" | ||
| #include "RlPosteriorPredictiveSimulation.h" | ||
| #include "RlPowerPosteriorAnalysis.h" | ||
| #include "RlSteppingStoneSampler.h" | ||
| #include "RlValidationAnalysis.h" | ||
| #include "RlAncestralStateTrace.h" | ||
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| /// Stopping Rules /// | ||
| #include "RlMaxIterationStoppingRule.h" | ||
| #include "RlMaxTimeStoppingRule.h" | ||
| #include "RlMinEssStoppingRule.h" | ||
| #include "RlGelmanRubinStoppingRule.h" | ||
| #include "RlGewekeStoppingRule.h" | ||
| #include "RlStationarityStoppingRule.h" | ||
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| /// Types /// | ||
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| /* These types are needed as template types for the moves */ | ||
| #include "RlBranchLengthTree.h" | ||
| #include "RlCharacterHistoryRateModifier.h" | ||
| #include "RlMonitor.h" | ||
| #include "RlMove.h" | ||
| #include "RlRateGenerator.h" | ||
| #include "RlCladogeneticProbabilityMatrix.h" | ||
| #include "RlCladogeneticSpeciationRateMatrix.h" | ||
| #include "RlTimeTree.h" | ||
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| /** Initialize global workspace */ | ||
| void RevLanguage::Workspace::initializeVectorTypeGlobalWorkspace(void) | ||
| { | ||
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| try | ||
| { | ||
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| AddWorkspaceVectorType<Taxon,4>::addTypeToWorkspace( *this, new Taxon() ); | ||
| AddWorkspaceVectorType<RateGenerator,3>::addTypeToWorkspace( *this, new RateGenerator() ); | ||
| AddWorkspaceVectorType<CladogeneticProbabilityMatrix,3>::addTypeToWorkspace( *this, new CladogeneticProbabilityMatrix() ); | ||
| AddWorkspaceVectorType<CladogeneticSpeciationRateMatrix,3>::addTypeToWorkspace( *this, new CladogeneticSpeciationRateMatrix() ); | ||
| AddWorkspaceVectorType<DistanceMatrix,3>::addTypeToWorkspace( *this, new DistanceMatrix() ); | ||
| AddWorkspaceVectorType<MatrixReal,3>::addTypeToWorkspace( *this, new MatrixReal() ); | ||
| AddWorkspaceVectorType<MatrixRealPos,3>::addTypeToWorkspace( *this, new MatrixRealPos() ); | ||
| AddWorkspaceVectorType<MatrixRealSymmetric,3>::addTypeToWorkspace( *this, new MatrixRealSymmetric() ); | ||
| AddWorkspaceVectorType<AbstractHomologousDiscreteCharacterData,3>::addTypeToWorkspace( *this, new AbstractHomologousDiscreteCharacterData() ); | ||
| AddWorkspaceVectorType<ContinuousCharacterData,3>::addTypeToWorkspace( *this, new ContinuousCharacterData() ); | ||
| AddWorkspaceVectorType<CharacterHistoryRateModifier,3>::addTypeToWorkspace( *this, new CharacterHistoryRateModifier() ); | ||
| AddWorkspaceVectorType<TimeTree,3>::addTypeToWorkspace( *this, new TimeTree() ); | ||
| AddWorkspaceVectorType<BranchLengthTree,3>::addTypeToWorkspace( *this, new BranchLengthTree() ); | ||
| AddWorkspaceVectorType<Tree,3>::addTypeToWorkspace( *this, new Tree() ); | ||
| AddWorkspaceVectorType<Clade,3>::addTypeToWorkspace( *this, new Clade() ); | ||
| // AddWorkspaceVectorType<Dist_bdp,3>::addTypeToWorkspace( *this, new Dist_bdp() ); | ||
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| } | ||
| catch(RbException& rbException) | ||
| { | ||
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| RBOUT("Caught an exception while initializing types in the workspace\n"); | ||
| std::ostringstream msg; | ||
| rbException.print(msg); | ||
| msg << std::endl; | ||
| RBOUT(msg.str()); | ||
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| RBOUT("Please report this bug to the RevBayes Development Core Team"); | ||
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| RBOUT("Press any character to exit the program."); | ||
| getchar(); | ||
| exit(1); | ||
| } | ||
| } |
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