phyml not finding a tree if option selected for random starting tree

[leonperrie]

Hello,
The results email is saying "Unexpected error: no inferred tree result file. Execution time: 0 minute(s)" when the option is selected for a random starting tree. When that option is not selected, the input file processes fine, producing a result.
I have tried this several times (including with an input file that worked previously), but if it helps, one of the jobs that didn't work was JobID 2307089.
Thank you,
Leon

[stephaneguindon]

Please let me know which version of PhyML you are using here and what the command-line options are as well.

[leonperrie]

Hi Stephane, I used the website<http://www.atgc-montpellier.fr/phyml/>. Settings were: Data type = DNA Substitution Model = Automatic, with Selection Criterion =AIC Starting tree = BIONJ Type of tree improvement = SPR Number of random starting tree = 10 (yes) Fast likelihood-based method = no Perform bootstrap = yes. The input file is available here<https://drive.google.com/open?id=1msppIp4C3v0wsWGS47Ad_P9t9kSDMa_g> in case it is useful. It seems to work file, except when using random starting trees. Thank you, Leon From: Stephane Guindon [mailto:[email protected]] Sent: Tuesday, 11 February 2020 9:53 PM To: stephaneguindon/phyml <[email protected]> Cc: Leon Perrie <[email protected]>; Author <[email protected]> Subject: Re: [stephaneguindon/phyml] phyml not finding a tree if option selected for random starting tree (#121) Please let me know which version of PhyML you are using here and what the command-line options are as well. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#121?email_source=notifications&email_token=AOQUXSLDE5SOVVRPP6SH2QDRCJRNNA5CNFSM4KSWVHSKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOELLTY6Y#issuecomment-584531067>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AOQUXSKES4T6MYSGCF2BH2LRCJRNNANCNFSM4KSWVHSA>.