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CHANGELOG.md

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Changelog

All notable changes to tool-NFTest.

The format is based on Keep a Changelog.

This project adheres to Semantic Versioning.

1.2.0 - 2024-11-19

Added

  • Add --report flag to write out a summary JSON file

Changed

  • Migrate package definition to pyproject.toml

Fixed

  • Properly catch failing test cases

1.1.0 - 2024-07-08

Added

  • Validation of reference files

Changed

  • Make nftest run exit with the number of failed tests
  • Use shell=False for subprocess
  • Capture Nextflow logs via syslog rather than console
  • Format all code with ruff
  • Encapsulate NFTestAssert interface, rewrite tests

Fixed

  • Make nftest with no arguments print usage and exit
  • Resolve non-determinism in NFTestENV unit tests

1.0.1 - 2024-01-05

Fixed

  • Path type passed to glob to identify files

1.0.0 - 2023-10-23

Added

  • Support for patterns in expected and actual file paths

1.0.0-rc.4 - 2023-10-04

Changed

  • Wrap all NextFlow output with real-time line-by-line log statements
  • Wrap custom comparison to log through NFTest logger
  • Add DEBUG lines about specific asserts
  • Assert that actual files are modified by pipelines

Fixed

  • Tests after real-time logging

1.0.0-rc.3 - 2023-05-25

Fixed

  • Properly set default value of clean_logs according to case and global settings

1.0.0-rc.2 - 2023-03-09

Added

  • Case name to output directory path to avoid over-writing
  • Support for Nextflow profiles

Changed

  • Override skip from configuration YAML for command line test cases

1.0.0-rc.1 - 2022-12-01

Added

  • .env loading
  • Custom directory options
  • Logging
  • Tests

Changed

  • Document detailed options in README