DESCRIPTION

Package: TransPhylo
Version: 1.4.10
Date: 2023-10-26
Title: Inference of Transmission Tree from a Dated Phylogeny
Authors@R: c(person("Xavier","Didelot",
                  email="xavier.didelot@gmail.com",
                  comment = c(ORCID = "0000-0003-1885-500X"),
                  role=c("aut", "cre")),
             person("Yuanwei", "Xu",
	           email = "y.xu@bham.ac.uk",
		         role = c("ctb")))
Maintainer: Xavier Didelot <xavier.didelot@gmail.com>
Description: Inference of transmission tree from a dated phylogeny. 
    Includes methods to simulate and analyse outbreaks.
    The methodology is described in
    Didelot et al. (2014) <doi:10.1093/molbev/msu121>,
    Didelot et al. (2017) <doi:10.1093/molbev/msw275>.
License: GPL (>=2)
Depends: R (>= 3.0.0)
Imports: Rcpp (>= 0.12.8), stats, graphics, ape
Suggests: knitr, testthat, purrr, coda, grDevices, lattice, rmarkdown
LinkingTo: Rcpp
Encoding: UTF-8
RoxygenNote: 7.2.3
SystemRequirements: C++11
VignetteBuilder: knitr
NeedsCompilation: yes