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10 Open 28 Closed
10 Open 28 Closed
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Issues list

Alternative reference sequence selection subworkflow to IRMA and BLAST enhancement New feature or request
#81 opened Sep 25, 2024 by peterk87
Update IRMA
#80 opened Sep 25, 2024 by peterk87
Ability to output consensus sequences based on quality metrics (i.e., breadth and depth of coverage) enhancement New feature or request
#64 opened Jan 26, 2024 by Codes1985
[BUG]: pull is only supported for shub URIs bug Something isn't working
#63 opened Jan 26, 2024 by virologist
1 task
@peterk87
1
Clair3 not variant calling ends of each segment
#61 opened Dec 22, 2023 by peterk87
4
Optional dehosting enhancement New feature or request
#50 opened Sep 14, 2023 by peterk87
[BUG]: Error executing process > 'NF_FLU:ILLUMINA:SUBTYPING_REPORT (1)' bug Something isn't working
#46 opened Sep 11, 2023 by PierreLyons
1 task done
@peterk87
4
More robust handling and preprocessing of user input sequences enhancement New feature or request
#3 opened Jun 9, 2022 by peterk87
@peterk87 @nhhaidee
Variant calling results should be used instead of BLAST to compare read mapping/variant calling consensus to reference sequences not necessary enhancement New feature or request
#2 opened Jun 9, 2022 by peterk87
@peterk87 @nhhaidee
Add custom references FASTA for CI tests enhancement New feature or request
#1 opened Jun 9, 2022 by peterk87
@peterk87 @nhhaidee
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