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Issues list

Requesting GeneralSubstitutionModel to update through a public method enhancement
#1181 by jordandouglas was closed Feb 27, 2025
Issue related to javafx
#1180 by starsareintherose was closed Feb 27, 2025
9
Issues running BEAST on linux server
#1179 by ViralVerity was closed Feb 24, 2025
2
TreeWithMetaDataLogger can produce extra commas
#1177 by rbouckaert was closed Jan 5, 2025
GPU not visible with '-beagle_info
#1176 by augustkx was closed Jan 4, 2025
1
java.lang.NullPointerException: Cannot invoke "beast.base.evolution.tree.Node.getNr()" because "<local7>" is null
#1170 by CiaccioE was closed Oct 23, 2024
3
Indexing error thrown when running beagle on a substitution model with complex eigenvalues
#1168 by jordandouglas was closed Sep 23, 2024
1
Package manager GUI hangs when 'Install/Upgrade' is done on package installed by hand
#1166 by rbouckaert was closed Sep 10, 2024
BEAST 2.7.7 is not launched after update
#1165 by trilisser was closed Sep 5, 2024
3
Adds CL packagemanager option to add repositories. Closes #1163
#1164 by tgvaughan was merged Sep 1, 2024 Loading…
No clean way to add external package repositories from the command line
#1163 by tgvaughan was closed Sep 1, 2024
Resuming from a state file does not update parameter dimensiom defect
#1159 by jordandouglas was closed Aug 5, 2024
1
Request a feature to use "version_file" in AppLauncher enhancement
#1158 by walterxie was closed Aug 6, 2024
2
Class (orc.consoperators.UcldScalerOperator) could not be found
#1157 by Chonghao98 was closed Jul 3, 2024
4
Generate xml file in linux command line
#1156 by Chonghao98 was closed Jun 28, 2024
2
Treeannotator not going to 100%
#1154 by asad-869 was closed Jun 13, 2024
1
no main manifest attribute on newer release
#1151 by xk42 was closed May 23, 2024
BEAUti error importing alignment
#1144 by dmsoong was closed Mar 27, 2024
1
TreeAnnotator does not respond to TargetTreeType in GUI
#1143 by rbouckaert was closed Mar 20, 2024
Clarification about Trees and StateNodeInitialiser
#1142 by jacklo225 was closed Mar 15, 2024
4
Randomizer per thread for deterministic behaviour when using threads
#1141 by rbouckaert was closed Jun 10, 2024
1
BEAST apps don't launch on Windows 10
#1137 by ms609 was closed Jan 24, 2024
4
AdaptableOperatorSampler should ignore operators with zero weight
#1136 by rbouckaert was closed Jan 1, 2024
Parameter does not restore properly after dimension change
#1130 by rbouckaert was closed Oct 2, 2023
AdaptableOperatorSampler should have a try catch around calling the tree metrix
#1129 by jordandouglas was closed Oct 1, 2023
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