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Add new protocol edit tools and ui #126

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Commits on Aug 4, 2023

  1. Configuration menu
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  2. cleanup, silence logging

    Patrick Cleeve committed Aug 4, 2023
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Commits on Aug 10, 2023

  1. V0.2 dev feedback (#119)

    * [FEAT] update initial notch position
    
    * [BUG] properly log milling protocols
    
    * [BUG] rename Setup to SetupTrench, fix initial state change
    
    * [BUG] flip ReadyLamella <> SetupLamella
    
    * [BUG] fix moving setup lamella
    
    * [FEAT] control over lamella stages supervision
    
    * [UI] update protocol UI
    
    * read all values from protocol
    
    * minor ui formatting
    
    * [FEAT] add detection to logging / analytics
    
    * add id for experiment
    
    * test notebook
    
    * refactor exp dataframe
    
    * working click data analytics
    
    * working click stats
    
    * clean up patterns
    
    * add new dx eucentric
    
    * [FEAT] upgraded stats / logging
    
    * ui and logging fixes
    
    * undercut update protocol
    
    * improved logging
    
    * fix ui
    
    * add stage / state logging
    
    * [TESTING] waffle grid
    
    * pypi shield
    
    * fix encoding for logs, make style consistent
    
    * gitignore
    
    * bump version
    
    * rm env file
    
    * move deprecated
    
    * fix classic autolamella setup
    patrickcleeve2 authored Aug 10, 2023
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Commits on Aug 14, 2023

  1. universal logging

    Patrick Cleeve committed Aug 14, 2023
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  2. analytics working for both programs

    Patrick Cleeve committed Aug 14, 2023
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  3. update checkpoint

    Patrick Cleeve committed Aug 14, 2023
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  4. make exp consistent

    Patrick Cleeve committed Aug 14, 2023
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  5. unsafe flag

    Patrick Cleeve committed Aug 14, 2023
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Commits on Aug 15, 2023

  1. improvements to statistics app

    Patrick Cleeve committed Aug 15, 2023
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  2. test waffle method

    Patrick Cleeve committed Aug 15, 2023
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  3. add metric delta

    Patrick Cleeve committed Aug 15, 2023
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Commits on Aug 16, 2023

  1. fix parser error, new df function

    Patrick Cleeve committed Aug 16, 2023
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Commits on Aug 17, 2023

  1. feed parent

    LucileNaegele committed Aug 17, 2023
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  2. add fixed offset for compucentric rotation

    Patrick Cleeve committed Aug 17, 2023
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Commits on Aug 21, 2023

  1. compucentric offset

    Patrick Cleeve committed Aug 21, 2023
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Commits on Aug 22, 2023

  1. updated log parser

    Patrick Cleeve committed Aug 22, 2023
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  2. log parser v2

    Patrick Cleeve committed Aug 22, 2023
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  3. bump version

    Patrick Cleeve committed Aug 22, 2023
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Commits on Aug 24, 2023

  1. update undercut protocol, time travel logging

    Patrick Cleeve committed Aug 24, 2023
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  2. update ml plots

    Patrick Cleeve committed Aug 24, 2023
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  3. add px to det log parser

    Patrick Cleeve committed Aug 24, 2023
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  4. fix log parser for missing data

    Patrick Cleeve committed Aug 24, 2023
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Commits on Aug 28, 2023

  1. thread sfae

    LucileNaegele committed Aug 28, 2023
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Commits on Sep 1, 2023

  1. Link minimap (#123)

    * feed parent
    
    * thread sfae
    
    * adding to minimap
    
    * minimap link
    
    * minimap up front
    
    * fix paths, add feature flag
    
    ---------
    
    Co-authored-by: Patrick Cleeve <[email protected]>
    LucileNaegele and Patrick Cleeve authored Sep 1, 2023
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Commits on Sep 4, 2023

  1. update protocols

    Patrick Cleeve committed Sep 4, 2023
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  2. fix: update napari manifest

    Patrick Cleeve committed Sep 4, 2023
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  3. protocol: bump model

    Patrick Cleeve committed Sep 4, 2023
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  4. Merge pull request #124 from DeMarcoLab/v0.2-dev-threading-img-and-mo…

    …vement
    
    V0.2 dev threading img and movement
    patrickcleeve2 authored Sep 4, 2023
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  5. fix threaded movements

    Patrick Cleeve committed Sep 4, 2023
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Commits on Sep 6, 2023

  1. bump requirements + protocol

    Patrick Cleeve committed Sep 6, 2023
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  2. bump protocol

    Patrick Cleeve committed Sep 6, 2023
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  3. rm unused

    Patrick Cleeve committed Sep 6, 2023
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Commits on Sep 7, 2023

  1. dev new protocol tools

    Patrick Cleeve committed Sep 7, 2023
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