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piescope_gui v0.2.0 #22

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piescope_gui v0.2.0 #22

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patrickcleeve2
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This pull request upgrades piescope_gui to version 0.2.0

Features include:

  • Updated user interface
  • Hardware connection buttons and indicators.
  • Improved volume imaging
  • Improved milling

DavidDierickx and others added 30 commits March 2, 2021 21:28
Added underscore for stop_event in live imaging
8eb9880
@DavidDierickx
Added trigger_mode inputs for camera_grab function
f2c17cd
@DavidDierickx
Added Pattern On, Pattern Next buttons. Changed slice number to total…
d73fb58 
… volume height
@DavidDierickx
Replace num_z_slices with volume_height
d4a7db0
@DavidDierickx
Fixed num_z_slice calculation, added laser_dict debug log
dd4bf79
@DavidDierickx
Implemented hardware triggering as default
3c71c13
@DavidDierickx
added mirror on button
5cc74c2
@DavidDierickx
Fixed pattern_on button
e5bb529
@DavidDierickx
Fixed import of structured
56817d5
@DavidDierickx
Added pattern_pin_on functionality
bf8e50f
@DavidDierickx
Fixed updating of laser power when hardware triggering single image
c70641d
Fixed pattern toggling. Removed functionality for laser_on button
0daf10c
Updated GUI for structured illumination, removed stack sliders, added…
65acfcc 
… more options for volume parametrisation
@DavidDierickx
update to github
b17d728
@DavidDierickx
Merge remote-tracking branch 'origin/Structured-Illumination' into St…
e4ca554 
…ructured-Illumination

# Conflicts:
#	piescope_gui/qtdesigner_files/main.py
#	piescope_gui/qtdesigner_files/main.ui
@DavidDierickx
added arduino and PIStage controls
ce9f30a
@DavidDierickx
fixed calibrations for mirror/shift
45ca860
@DavidDierickx
Clean up GUI.init
986af02
@DavidDierickx
remove mocking and fix offline start
2a6060a
@DavidDierickx
add ip and oflfine to config
7af5823
@DavidDierickx
remove 'this' import
0a4b4a6
@DavidDierickx
remove unused imports
16a6a45
@DavidDierickx
fix initialise initialize inconsiztency
285cb82
@DavidDierickx
updated update_current_laser function
40e9849
@DavidDierickx
update laser_dictionary to use LaserController
4187be2
@DavidDierickx
remove unused mirror methods for slm
ecb88f7
@DavidDierickx
send to other computer
8a03b2d
@DavidDierickx
update paths
ba6d243
@DavidDierickx
create github actions workflow
97278dc
@DavidDierickx
update actions
a74c98b
@pep8speaks
Copy link

pep8speaks commented Mar 25, 2022 •
edited
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Hello @patrickcleeve2! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

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Line 1159:80: E501 line too long (99 > 79 characters)
Line 1160:80: E501 line too long (88 > 79 characters)
Line 1161:80: E501 line too long (101 > 79 characters)
Line 1162:80: E501 line too long (81 > 79 characters)
Line 1163:80: E501 line too long (89 > 79 characters)
Line 1164:80: E501 line too long (86 > 79 characters)
Line 1165:80: E501 line too long (89 > 79 characters)
Line 1166:80: E501 line too long (80 > 79 characters)
Line 1167:80: E501 line too long (84 > 79 characters)

Line 11:1: E302 expected 2 blank lines, found 1
Line 34:58: E227 missing whitespace around bitwise or shift operator
Line 34:78: E227 missing whitespace around bitwise or shift operator
Line 34:80: E501 line too long (101 > 79 characters)
Line 37:80: E501 line too long (91 > 79 characters)
Line 38:80: E501 line too long (87 > 79 characters)
Line 39:80: E501 line too long (82 > 79 characters)
Line 41:57: E227 missing whitespace around bitwise or shift operator
Line 41:77: E227 missing whitespace around bitwise or shift operator
Line 41:80: E501 line too long (100 > 79 characters)
Line 50:57: E227 missing whitespace around bitwise or shift operator
Line 50:77: E227 missing whitespace around bitwise or shift operator
Line 50:80: E501 line too long (100 > 79 characters)
Line 54:57: E227 missing whitespace around bitwise or shift operator
Line 54:77: E227 missing whitespace around bitwise or shift operator
Line 54:80: E501 line too long (100 > 79 characters)
Line 57:80: E501 line too long (90 > 79 characters)
Line 58:80: E501 line too long (85 > 79 characters)
Line 59:80: E501 line too long (81 > 79 characters)
Line 66:57: E227 missing whitespace around bitwise or shift operator
Line 66:77: E227 missing whitespace around bitwise or shift operator
Line 66:80: E501 line too long (100 > 79 characters)
Line 69:80: E501 line too long (112 > 79 characters)
Line 71:80: E501 line too long (89 > 79 characters)
Line 72:80: E501 line too long (83 > 79 characters)
Line 73:80: E501 line too long (81 > 79 characters)
Line 82:80: E501 line too long (113 > 79 characters)
Line 84:80: E501 line too long (83 > 79 characters)
Line 96:57: E227 missing whitespace around bitwise or shift operator
Line 96:77: E227 missing whitespace around bitwise or shift operator
Line 96:80: E501 line too long (100 > 79 characters)
Line 105:57: E227 missing whitespace around bitwise or shift operator
Line 105:77: E227 missing whitespace around bitwise or shift operator
Line 105:80: E501 line too long (100 > 79 characters)
Line 108:80: E501 line too long (84 > 79 characters)
Line 114:80: E501 line too long (90 > 79 characters)
Line 117:80: E501 line too long (85 > 79 characters)
Line 118:80: E501 line too long (81 > 79 characters)
Line 119:80: E501 line too long (92 > 79 characters)
Line 121:80: E501 line too long (81 > 79 characters)
Line 123:80: E501 line too long (95 > 79 characters)
Line 124:80: E501 line too long (87 > 79 characters)
Line 125:80: E501 line too long (113 > 79 characters)
Line 128:55: E227 missing whitespace around bitwise or shift operator
Line 128:75: E227 missing whitespace around bitwise or shift operator
Line 128:80: E501 line too long (98 > 79 characters)
Line 131:80: E501 line too long (89 > 79 characters)
Line 132:80: E501 line too long (83 > 79 characters)
Line 133:80: E501 line too long (81 > 79 characters)
Line 135:58: E227 missing whitespace around bitwise or shift operator
Line 135:78: E227 missing whitespace around bitwise or shift operator
Line 135:80: E501 line too long (101 > 79 characters)
Line 138:80: E501 line too long (84 > 79 characters)
Line 144:80: E501 line too long (113 > 79 characters)
Line 146:80: E501 line too long (113 > 79 characters)
Line 176:80: E501 line too long (83 > 79 characters)
Line 177:80: E501 line too long (80 > 79 characters)
Line 181:80: E501 line too long (85 > 79 characters)
Line 183:80: E501 line too long (89 > 79 characters)
Line 184:80: E501 line too long (84 > 79 characters)
Line 185:80: E501 line too long (84 > 79 characters)
Line 186:80: E501 line too long (91 > 79 characters)
Line 187:80: E501 line too long (107 > 79 characters)
Line 189:80: E501 line too long (81 > 79 characters)
Line 190:80: E501 line too long (91 > 79 characters)
Line 191:1: W391 blank line at end of file

Line 35:1: E302 expected 2 blank lines, found 1
Line 35:80: E501 line too long (80 > 79 characters)
Line 64:80: E501 line too long (85 > 79 characters)
Line 67:80: E501 line too long (89 > 79 characters)

Comment last updated at 2022-07-18 00:59:15 UTC

DavidDierickx and others added 20 commits March 25, 2022 17:04
@DavidDierickx
threading issues with live imaging
fdd796c
multi-threaded live imaging fix (locks)
fe88e7d
@DavidDierickx
center window on open
c14f495
@DavidDierickx
fix volume saving notes
c05a6ab
@DavidDierickx
change return button
e8143fb
multi-threading fix
855193c
Merge branch 'develop' of https://github.com/DeMarcoLab/piescope_gui …
b0d3eda 
…into develop
fix window modal property
7ee484b
@DavidDierickx
add phase selection
3f47122
updated phase movements
03a3429
@patrickcleeve2
Merge pull request #23 from DeMarcoLab/phases
fd29eba 
Phases
@DavidDierickx
change connect_to_basler to connect_to_light
49ae48d
@DavidDierickx
update basler string
d41f5f1
@DavidDierickx
Update detector calls
fbe85c1
[FEAT] update for hammamatsu, fix modality save location
c15adfa
[FEAT] add zoom for light imaging
fd283ac
[FEAT] add image clip
742149a
[FEAT] add histogram, adjust layout
d0b1884
@patrickcleeve2
Merge pull request #24 from DeMarcoLab/hamamatsu
1a636a4 
Hamamatsu
doc update
fc67068
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@patrickcleeve2 @pep8speaks @DavidDierickx