Update test suit to fix failures and improve setup #39
Workflow file for this run
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| name: Test changed files on pull request | |
| # This workflow selectively tests only Jupyter notebooks that were modified in a pull request to the develop branch. | |
| # It provides targeted testing to verify that changes to specific notebooks don't introduce problems. | |
| on: | |
| # Run whenever a pull request is made or updated against the develop branch | |
| # This catches potential issues early before changes are merged | |
| pull_request: | |
| branches: [ develop ] | |
| permissions: | |
| id-token: write # Required for OIDC authentication to AWS | |
| contents: read | |
| jobs: | |
| test-notebooks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: dea-notebooks | |
| - name: Get changed notebook files | |
| id: changed-notebooks | |
| uses: tj-actions/changed-files@v45 | |
| with: | |
| files: '**/*.ipynb' | |
| separator: ' ' | |
| - name: Print changed notebook files | |
| if: steps.changed-notebooks.outputs.any_changed == 'true' | |
| run: | | |
| echo "Changed notebook files:" | |
| echo "${{ steps.changed-notebooks.outputs.all_changed_files }}" | |
| - name: Set up database access and tests | |
| if: steps.changed-notebooks.outputs.any_changed == 'true' | |
| uses: ./dea-notebooks/.github/actions/test_setup | |
| with: | |
| image: stable | |
| - name: Test changed Jupyter notebooks only | |
| if: steps.changed-notebooks.outputs.any_changed == 'true' | |
| run: | | |
| sudo chown -R 1000:100 ./dea-notebooks | |
| cd ./dea-notebooks | |
| docker run --rm \ | |
| --net=host \ | |
| --env DATACUBE_DB_URL \ | |
| --env AWS_SESSION_TOKEN \ | |
| --env AWS_REGION \ | |
| --env AWS_ACCESS_KEY_ID \ | |
| --env AWS_SECRET_ACCESS_KEY \ | |
| --env AWS_SESSION_TOKEN \ | |
| --volume ${GITHUB_WORKSPACE}/dea-notebooks:/home/jovyan/dea-notebooks \ | |
| --volume ${GITHUB_WORKSPACE}/tide_models:/var/share/tide_models \ | |
| --env GDAL_HTTP_MAX_RETRY=10 \ | |
| --entrypoint /bin/bash \ | |
| 538673716275.dkr.ecr.ap-southeast-2.amazonaws.com/geoscienceaustralia/sandbox:stable \ | |
| /home/jovyan/dea-notebooks/Tests/test_notebooks.sh "${{ steps.changed-notebooks.outputs.all_changed_files }}" |