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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 912 457

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 229 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 277 139

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 33

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 60

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 189 90

Repositories

Showing 10 of 319 repositories
  • dbt-synthea Public

    [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

    OHDSI/dbt-synthea’s past year of commit activity
    Python 20 Apache-2.0 8 23 3 Updated Jan 31, 2025
  • SelfControlledCaseSeries Public

    An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.

    OHDSI/SelfControlledCaseSeries’s past year of commit activity
    R 13 8 11 0 Updated Jan 31, 2025
  • PhenotypeR Public
    OHDSI/PhenotypeR’s past year of commit activity
    R 2 Apache-2.0 0 37 0 Updated Jan 30, 2025
  • ImageWG Public

    Repository for medical image working group

    OHDSI/ImageWG’s past year of commit activity
    Rich Text Format 8 Apache-2.0 4 5 0 Updated Jan 30, 2025
  • Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    OHDSI/Vocabulary-v5.0’s past year of commit activity
    PLpgSQL 229 Unlicense 75 222 11 Updated Jan 30, 2025
  • PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    OHDSI/PatientLevelPrediction’s past year of commit activity
    HTML 189 90 26 (1 issue needs help) 1 Updated Jan 30, 2025
  • OHDSI/CohortConstructor’s past year of commit activity
    R 1 Apache-2.0 0 40 3 Updated Jan 30, 2025
  • context Public

    A python library to create knowledge graphs for context-aware prediction modeling and more.

    OHDSI/context’s past year of commit activity
    Python 0 0 1 0 Updated Jan 30, 2025
  • SqlRender Public

    This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

    OHDSI/SqlRender’s past year of commit activity
    R 82 79 10 (4 issues need help) 0 Updated Jan 30, 2025
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 15 Apache-2.0 15 0 1 Updated Jan 30, 2025

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