cleaning and updating scores with a couple vulnerability corrections.

OHI-Science · Oct 11, 2024 · 3ce98d2 · 3ce98d2
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Showing 208 changed files with 84,149 additions and 56,049 deletions.
diff --git a/_spatial/bathy_mol.tif b/_spatial/bathy_mol.tif
diff --git a/_spatial/bathy_mol_neritic.tif b/_spatial/bathy_mol_neritic.tif
diff --git a/_spatial/bathy_mol_shallow.tif b/_spatial/bathy_mol_shallow.tif
diff --git a/_spatial/meow_prov_mol.tif b/_spatial/meow_prov_mol.tif
diff --git a/_spatial/meow_rgns/meow_rgns.cpg b/_spatial/meow_rgns/meow_rgns.cpg
diff --git a/_spatial/meow_rgns/meow_rgns.dbf b/_spatial/meow_rgns/meow_rgns.dbf
diff --git a/_spatial/meow_rgns/meow_rgns.prj b/_spatial/meow_rgns/meow_rgns.prj
diff --git a/_spatial/meow_rgns/meow_rgns.shp b/_spatial/meow_rgns/meow_rgns.shp
diff --git a/_spatial/meow_rgns/meow_rgns.shx b/_spatial/meow_rgns/meow_rgns.shx
diff --git a/_spatial/meow_rgns/rgns_mol_1k.gpkg b/_spatial/meow_rgns/rgns_mol_1k.gpkg
diff --git a/_spatial/meow_rgns_mol.tif b/_spatial/meow_rgns_mol.tif
diff --git a/combining_pressures/combining_pressures.Rmd b/combining_pressures/combining_pressures.Rmd
@@ -18,21 +18,25 @@ Save final pressure files to consistent file location and adjust filenaming.
 
 pressure_save <- "/home/shares/ohi/stressors_2021/combining_pressures/rescaled_pressures"
 pressure_list <- read_csv(here("combining_pressures/pressure_list.csv"))
+file.remove(list.files(pressure_save, full=TRUE))
 
 files_to_save <- paste0(pressure_list$f_path, "/", pressure_list$fn_pressure, "_",  pressure_list$fn_scenario, "_", pressure_list$fn_time, ".tif")
 files_new_loc <- paste0(pressure_save, "/", pressure_list$new_fn_pressure, "_", pressure_list$fn_scenario, "_", pressure_list$fn_time, ".tif")
 for (i in seq_along(files_to_save)) { # i = 178
   file.copy(from = files_to_save[i], to = files_new_loc[i], overwrite = TRUE)
 }
 
-length(list.files(pressure_save)) # currently should be 203
+length(list.files(pressure_save)) # currently should be 227
 
 ```
 
 
 Calculate raster differences
 ```{r}
 
+clean <- list.files("/home/shares/ohi/stressors_2021/combining_pressures/change", full=TRUE)
+file.remove(clean)
+
 files_df <- data.frame(fp = list.files("/home/shares/ohi/stressors_2021/combining_pressures/rescaled_pressures", full=TRUE))
 files_df$fn <- basename(files_df$fp) 
 files_df <- files_df %>%
@@ -73,6 +77,9 @@ for(pressure in pressure_list){ # pressure = pressure_list[1]
 Obtain cumulative pressures
 ```{r}
 
+clean <- list.files("/home/shares/ohi/stressors_2021/combining_pressures/cumulative/", full=TRUE)
+file.remove(clean)
+
 files_df <- data.frame(fp = list.files("/home/shares/ohi/stressors_2021/combining_pressures/rescaled_pressures", full=TRUE))
 files_df$fn <- basename(files_df$fp) 
 files_df <- files_df %>%
@@ -94,11 +101,14 @@ for (i in 1:dim(cumulative_list)[1]){ # i = 1
    cat(as.character(scenario), " ", as.character(timeframe), " ", length(file_list$df_pressure), "\n")
   stack <- rast(file_list$fp)
   cumulative <- app(stack, "sum", na.rm=TRUE)
-  writeRaster(cumulative, sprintf("/home/shares/ohi/stressors_2021/combining_pressures/cumulative/%s_%s.tif", scenario, timeframe))
+  writeRaster(cumulative, sprintf("/home/shares/ohi/stressors_2021/combining_pressures/cumulative/%s_%s.tif", scenario, timeframe), overwrite=TRUE)
   
 }
 
-#check that all outputs have N=11 (or, whatever!)
+#check that all outputs have N=12
+
+clean <- list.files("/home/shares/ohi/stressors_2021/combining_pressures/cumulative_change/", full=TRUE)
+file.remove(clean)
 
 list.files("/home/shares/ohi/stressors_2021/combining_pressures/cumulative/", full=TRUE)
 
@@ -128,6 +138,8 @@ writeRaster(ssp585_t2, "/home/shares/ohi/stressors_2021/combining_pressures/cumu
 
 Make cumulative figures
 ```{r}
+clean <- list.files(here("combining_pressures/figs_cumulative"), full=TRUE)
+file.remove(clean)
 
 library(paletteer)
 library(png)
@@ -164,6 +176,9 @@ Make cumulative difference raster plots.
 
 ```{r}
 
+clean <- list.files(here("combining_pressures/figs_cumulative_diff"), full=TRUE)
+file.remove(clean)
+
 tmp <- list.files("/home/shares/ohi/stressors_2021/combining_pressures/cumulative", full=TRUE)
 
 ssp245_near_change <- rast("/home/shares/ohi/stressors_2021/combining_pressures/cumulative/ssp245_near-term.tif") - rast("/home/shares/ohi/stressors_2021/combining_pressures/cumulative/ssp245_current.tif")

diff --git a/combining_pressures/data/pressure_colors.csv b/combining_pressures/data/pressure_colors.csv
@@ -13,11 +13,13 @@ slr,coastal,#499894FF
 slr,global,#86BCB6FF
 coastal-disturbance,coastal,#E15759FF
 coastal-disturbance,global,#FF9D9AFF
-oxygen-deep,coastal,#79706EFF
-oxygen-deep,global,#BAB0ACFF
+oxygen-benthic,coastal,#79706EFF
+oxygen-benthic,global,#BAB0ACFF
 oa,coastal,#D37295FF
 oa,global,#FABFD2FF
 fisheries-biomass-loss,coastal,#B07AA1FF
 fisheries-biomass-loss,global,#D4A6C8FF
 sst-extremes,coastal,#9D7660FF
 sst-extremes,global,#D7B5A6FF
+temperature-benthic,coastal,#8C564BFF
+temperature-benthic,global,#C49C94FF
diff --git a/combining_pressures/figs_cumulative/ssp245_current.tif.png b/combining_pressures/figs_cumulative/ssp245_current.tif.png
diff --git a/combining_pressures/figs_cumulative/ssp245_medium-term.tif.png b/combining_pressures/figs_cumulative/ssp245_medium-term.tif.png
diff --git a/combining_pressures/figs_cumulative/ssp245_near-term.tif.png b/combining_pressures/figs_cumulative/ssp245_near-term.tif.png
diff --git a/combining_pressures/figs_cumulative/ssp585_current.tif.png b/combining_pressures/figs_cumulative/ssp585_current.tif.png
diff --git a/combining_pressures/figs_cumulative/ssp585_medium-term.tif.png b/combining_pressures/figs_cumulative/ssp585_medium-term.tif.png
diff --git a/combining_pressures/figs_cumulative/ssp585_near-term.tif.png b/combining_pressures/figs_cumulative/ssp585_near-term.tif.png
diff --git a/combining_pressures/figs_cumulative_diff/ssp245_medium-change.png b/combining_pressures/figs_cumulative_diff/ssp245_medium-change.png
diff --git a/combining_pressures/figs_cumulative_diff/ssp245_near-change.png b/combining_pressures/figs_cumulative_diff/ssp245_near-change.png
diff --git a/combining_pressures/figs_cumulative_diff/ssp585_medium-change.png b/combining_pressures/figs_cumulative_diff/ssp585_medium-change.png
diff --git a/combining_pressures/figs_cumulative_diff/ssp585_near-change.png b/combining_pressures/figs_cumulative_diff/ssp585_near-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp1_long-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp1_long-change.png
diff --git a/...pressures/figs_difference_floating_scale/light-pollution_ssp1_medium-change.png b/...pressures/figs_difference_floating_scale/light-pollution_ssp1_medium-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp1_near-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp1_near-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp2_long-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp2_long-change.png
diff --git a/...pressures/figs_difference_floating_scale/light-pollution_ssp2_medium-change.png b/...pressures/figs_difference_floating_scale/light-pollution_ssp2_medium-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp2_near-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp2_near-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp3_long-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp3_long-change.png
diff --git a/...pressures/figs_difference_floating_scale/light-pollution_ssp3_medium-change.png b/...pressures/figs_difference_floating_scale/light-pollution_ssp3_medium-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp3_near-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp3_near-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp4_long-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp4_long-change.png
diff --git a/...pressures/figs_difference_floating_scale/light-pollution_ssp4_medium-change.png b/...pressures/figs_difference_floating_scale/light-pollution_ssp4_medium-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp4_near-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp4_near-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp5_long-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp5_long-change.png
diff --git a/...pressures/figs_difference_floating_scale/light-pollution_ssp5_medium-change.png b/...pressures/figs_difference_floating_scale/light-pollution_ssp5_medium-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/light-pollution_ssp5_near-change.png b/...g_pressures/figs_difference_floating_scale/light-pollution_ssp5_near-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp119_long-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp119_long-change.png
diff --git a/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp119_medium-change.png b/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp119_medium-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp119_near-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp119_near-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp126_long-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp126_long-change.png
diff --git a/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp126_medium-change.png b/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp126_medium-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp126_near-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp126_near-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp245_long-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp245_long-change.png
diff --git a/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp245_medium-change.png b/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp245_medium-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp245_near-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp245_near-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp370_long-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp370_long-change.png
diff --git a/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp370_medium-change.png b/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp370_medium-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp370_near-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp370_near-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp460_long-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp460_long-change.png
diff --git a/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp460_medium-change.png b/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp460_medium-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp460_near-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp460_near-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp585_long-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp585_long-change.png
diff --git a/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp585_medium-change.png b/...ressures/figs_difference_floating_scale/oxygen-benthic_ssp585_medium-change.png
diff --git a/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp585_near-change.png b/..._pressures/figs_difference_floating_scale/oxygen-benthic_ssp585_near-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp119_long-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp119_long-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp119_medium-change.png b/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp119_medium-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp119_near-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp119_near-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp126_long-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp126_long-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp126_medium-change.png b/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp126_medium-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp126_near-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp126_near-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp245_long-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp245_long-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp245_medium-change.png b/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp245_medium-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp245_near-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp245_near-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp370_long-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp370_long-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp370_medium-change.png b/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp370_medium-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp370_near-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp370_near-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp460_long-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp460_long-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp460_medium-change.png b/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp460_medium-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp460_near-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp460_near-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp585_long-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp585_long-change.png
diff --git a/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp585_medium-change.png b/...g_pressures/figs_difference_floating_scale/oxygen-deep_ssp585_medium-change.png
diff --git a/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp585_near-change.png b/...ing_pressures/figs_difference_floating_scale/oxygen-deep_ssp585_near-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp119_long-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp119_long-change.png
diff --git a/...res/figs_difference_floating_scale/temperature-benthic_ssp119_medium-change.png b/...res/figs_difference_floating_scale/temperature-benthic_ssp119_medium-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp119_near-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp119_near-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp126_long-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp126_long-change.png
diff --git a/...res/figs_difference_floating_scale/temperature-benthic_ssp126_medium-change.png b/...res/figs_difference_floating_scale/temperature-benthic_ssp126_medium-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp126_near-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp126_near-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp245_long-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp245_long-change.png
diff --git a/...res/figs_difference_floating_scale/temperature-benthic_ssp245_medium-change.png b/...res/figs_difference_floating_scale/temperature-benthic_ssp245_medium-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp245_near-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp245_near-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp370_long-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp370_long-change.png
diff --git a/...res/figs_difference_floating_scale/temperature-benthic_ssp370_medium-change.png b/...res/figs_difference_floating_scale/temperature-benthic_ssp370_medium-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp370_near-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp370_near-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp460_long-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp460_long-change.png
diff --git a/...res/figs_difference_floating_scale/temperature-benthic_ssp460_medium-change.png b/...res/figs_difference_floating_scale/temperature-benthic_ssp460_medium-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp460_near-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp460_near-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp585_long-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp585_long-change.png
diff --git a/...res/figs_difference_floating_scale/temperature-benthic_ssp585_medium-change.png b/...res/figs_difference_floating_scale/temperature-benthic_ssp585_medium-change.png
diff --git a/...sures/figs_difference_floating_scale/temperature-benthic_ssp585_near-change.png b/...sures/figs_difference_floating_scale/temperature-benthic_ssp585_near-change.png
diff --git a/combining_pressures/figs_differences.Rmd b/combining_pressures/figs_differences.Rmd
@@ -17,7 +17,11 @@ cols_palette <- paletteer_c("ggthemes::Sunset-Sunrise Diverging", 30)
 ```
 
 ```{r, include = FALSE, echo=FALSE}
+
+clean <-  list.files(here("combining_pressures/figs_difference_floating_scale"), full=TRUE)
+file.remove(clean)
 # make the pngs of the data
+
 files <- list.files("/home/shares/ohi/stressors_2021/combining_pressures/change/", full=TRUE)
 
 

diff --git a/combining_pressures/figs_differences.html b/combining_pressures/figs_differences.html
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp1_current.png b/combining_pressures/figs_floating_scale/light-pollution_ssp1_current.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp1_long-term.png b/combining_pressures/figs_floating_scale/light-pollution_ssp1_long-term.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp1_medium-term.png b/combining_pressures/figs_floating_scale/light-pollution_ssp1_medium-term.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp1_near-term.png b/combining_pressures/figs_floating_scale/light-pollution_ssp1_near-term.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp2_current.png b/combining_pressures/figs_floating_scale/light-pollution_ssp2_current.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp2_long-term.png b/combining_pressures/figs_floating_scale/light-pollution_ssp2_long-term.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp2_medium-term.png b/combining_pressures/figs_floating_scale/light-pollution_ssp2_medium-term.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp2_near-term.png b/combining_pressures/figs_floating_scale/light-pollution_ssp2_near-term.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp3_current.png b/combining_pressures/figs_floating_scale/light-pollution_ssp3_current.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp3_long-term.png b/combining_pressures/figs_floating_scale/light-pollution_ssp3_long-term.png
diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp3_medium-term.png b/combining_pressures/figs_floating_scale/light-pollution_ssp3_medium-term.png
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diff --git a/combining_pressures/figs_floating_scale/light-pollution_ssp4_current.png b/combining_pressures/figs_floating_scale/light-pollution_ssp4_current.png
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diff --git a/combining_pressures/figs_floating_scale/temperature-benthic_ssp119_current.png b/combining_pressures/figs_floating_scale/temperature-benthic_ssp119_current.png
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diff --git a/combining_pressures/figs_floating_scale/temperature-benthic_ssp370_current.png b/combining_pressures/figs_floating_scale/temperature-benthic_ssp370_current.png
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diff --git a/combining_pressures/figs_floating_scale/temperature-benthic_ssp460_current.png b/combining_pressures/figs_floating_scale/temperature-benthic_ssp460_current.png
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diff --git a/combining_pressures/figs_floating_scale/temperature-benthic_ssp460_near-term.png b/combining_pressures/figs_floating_scale/temperature-benthic_ssp460_near-term.png
diff --git a/combining_pressures/figs_floating_scale/temperature-benthic_ssp585_current.png b/combining_pressures/figs_floating_scale/temperature-benthic_ssp585_current.png
diff --git a/combining_pressures/figs_floating_scale/temperature-benthic_ssp585_long-term.png b/combining_pressures/figs_floating_scale/temperature-benthic_ssp585_long-term.png
diff --git a/combining_pressures/figs_floating_scale/temperature-benthic_ssp585_medium-term.png b/combining_pressures/figs_floating_scale/temperature-benthic_ssp585_medium-term.png
diff --git a/combining_pressures/figs_floating_scale/temperature-benthic_ssp585_near-term.png b/combining_pressures/figs_floating_scale/temperature-benthic_ssp585_near-term.png
diff --git a/combining_pressures/figs_rescaled_floating_scale.Rmd b/combining_pressures/figs_rescaled_floating_scale.Rmd
@@ -17,6 +17,9 @@ cols_palette <- paletteer_c("ggthemes::Sunset-Sunrise Diverging", 30)
 ```
 
 ```{r, include = FALSE, echo=FALSE}
+
+clean <- list.files("combining_pressures/figs_floating_scale", full=TRUE)
+file.remove(clean)
 # make the pngs of the data
 files <- list.files("/home/shares/ohi/stressors_2021/combining_pressures/rescaled_pressures", full=TRUE)
 

diff --git a/combining_pressures/figs_rescaled_floating_scale.html b/combining_pressures/figs_rescaled_floating_scale.html
diff --git a/combining_pressures/paper_figs/current_future_scatterplot.png b/combining_pressures/paper_figs/current_future_scatterplot.png
diff --git a/combining_pressures/paper_figs/georgn_pressure_change_barplot.png b/combining_pressures/paper_figs/georgn_pressure_change_barplot.png
diff --git a/combining_pressures/paper_figs/habitat_impact_change_barplot.png b/combining_pressures/paper_figs/habitat_impact_change_barplot.png
diff --git a/combining_pressures/pressure_change.png b/combining_pressures/pressure_change.png
diff --git a/documents/pressure_review.Rmd b/documents/pressure_review.Rmd
@@ -98,7 +98,7 @@ Non-indigenous species | marine vessel transport, mariculture, aquarium trade
 
 ** includes categories of extreme events (number of days > 35 or 40 C, dry and wet bulb temperatures)
 
-We were able to get current and future estimates for 11 of the pressure categories (I am still going to assume I can get the fisheries stuff). These data included various scenarios and methodologies. Without future projections, we were able to map 14 pressures. Major data limitations include:
+We were able to get current and future estimates for 10 of the pressure categories. These data included various scenarios and methodologies. Without future projections, we were able to map 14 pressures. Major data limitations include:
 
 - locations of most coastal and marine structures (hardening, windmills, wave energy, coastal hardening) 
 - a great deal of uncertainty in the location of mariculture