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mSWEEP-v1.6.2 (12 August 2022)
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@tmaklin tmaklin released this 12 Aug 11:11
· 282 commits to master since this release
v1.6.2
11b3eca
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Learn about vigilant mode.

Updated dependencies and bug hunting.

Bug fixes

  • Fix interaction of --no-fit-model with WriteResults.
  • Skip erroneously trying to write the probability matrix if --no-fit-model was toggled.

Updated dependencies

Use telescope v0.4.0

  • About 10x speedup in reading pseudoalignments.
  • May reduce the memory footprint on large input.

Use rcgpar v1.0.2

  • Fixes MPI estimation when the input data dimensions exceed the capacity of 32 bit signed integers.
  • Enables compilation without MPI support even when MPI headers are present on the system.

Internal changes

  • Rename log.hpp -> msweep_log.hpp and correct the header guard to avoid some conflicts with dependencies.

Build pipeline

  • Use the CMAKE_ENABLE_MPI_SUPPORT flag to compile with or without support for MPI.
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