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@SysBioChalmers

Systems and Synthetic Biology at Chalmers University of Technology

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  1. Human-GEM Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    MATLAB 106 44

  2. yeast-GEM yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    MATLAB 99 47

  3. RAVEN RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    MATLAB 107 54

  4. GECKO GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    MATLAB 69 51

  5. DLKcat DLKcat Public

    Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

    Python 145 56

Repositories

Showing 10 of 103 repositories
  • Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    SysBioChalmers/Human-GEM’s past year of commit activity
    MATLAB 106 CC-BY-4.0 44 84 6 Updated Feb 20, 2025
  • ecFactory Public

    A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism

    SysBioChalmers/ecFactory’s past year of commit activity
    MATLAB 8 GPL-3.0 4 1 1 Updated Feb 12, 2025
  • CellFactory-ecYeastGEM Public

    Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.

    SysBioChalmers/CellFactory-ecYeastGEM’s past year of commit activity
    MATLAB 2 CC-BY-4.0 2 6 1 Updated Feb 12, 2025
  • sysbio.se Public

    The sysbio.se source code

    SysBioChalmers/sysbio.se’s past year of commit activity
    CSS 0 MIT 2 1 0 Updated Jan 29, 2025
  • RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    SysBioChalmers/RAVEN’s past year of commit activity
    MATLAB 107 54 8 0 Updated Jan 22, 2025
  • yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    SysBioChalmers/yeast-GEM’s past year of commit activity
    MATLAB 99 CC-BY-4.0 47 30 (6 issues need help) 1 Updated Nov 25, 2024
  • sint-GEM Public

    Genome-scale metabolic model of Candida intermedia

    SysBioChalmers/sint-GEM’s past year of commit activity
    MATLAB 0 GPL-3.0 0 7 0 Updated Nov 14, 2024
  • GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    SysBioChalmers/GECKO’s past year of commit activity
    MATLAB 69 MIT 51 11 2 Updated Oct 19, 2024
  • GAGome-BCa Public
    SysBioChalmers/GAGome-BCa’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 28, 2024
  • Yarrowia_Multifactor Public

    Data and scripts used for the RNA-seq analysis of Yarrowia lipolytica (fat-free strain and urea utilisation)

    SysBioChalmers/Yarrowia_Multifactor’s past year of commit activity
    MATLAB 1 MIT 1 0 0 Updated Jun 24, 2024
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