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@XSLiuLab

XSLiuLab

Research group led by Xue-Song Liu in ShanghaiTech. University

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  1. Workshop Workshop Public

    课题组每周研讨会

    HTML 175 50

  2. tumor-immunogenicity-score tumor-immunogenicity-score Public

    TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

    R 30 16

  3. PC_CNA_signature PC_CNA_signature Public

    Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/

    R 12 7

  4. ecDNA_immune ecDNA_immune Public

    Extrachromosomal DNA is associated with decreased immune cell infiltration and antigen presentation, represents a potential cancer immune evasion mechanism

    HTML 7 3

  5. Immunoediting Immunoediting Public

    Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution

    HTML 10 1

  6. Neodb Neodb Public

    Shiny Web Server and Database for Neoantigen discovery

    Jupyter Notebook 3

Repositories

Showing 10 of 41 repositories
  • Pep2TCR Public

    Pep2TCR: a novel deep learning method for CD4 TCR specificity prediction

    XSLiuLab/Pep2TCR’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 9, 2024
  • TCfinder Public
    XSLiuLab/TCfinder’s past year of commit activity
    R 8 2 0 0 Updated Sep 2, 2024
  • CancerBiology Public

    Support materials for 《Cancer Biology》，Shanghaitech University

    XSLiuLab/CancerBiology’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jul 11, 2024
  • DeepMeta Public

    Precise metabolic dependencies of cancer through deep learning

    XSLiuLab/DeepMeta’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jun 27, 2024
  • CNAfingerprint_demo Public
    XSLiuLab/CNAfingerprint_demo’s past year of commit activity
    0 0 0 0 Updated May 4, 2024
  • CNAfingerprint Public
    XSLiuLab/CNAfingerprint’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated May 4, 2024
  • single-cell-CNA-signature Public

    This repository provides the analysis reports, code and data for readers who are insterest in this project and make it easier to reproduce the whole analysis procedure.

    XSLiuLab/single-cell-CNA-signature’s past year of commit activity
    R 0 0 0 0 Updated Apr 19, 2024
  • hypoxia_target Public

    Deep learning reveals the metabolic vulnerability of hypoxic tumor cells and the critical function of FLAD1 mediated tumor hypoxia adaption

    XSLiuLab/hypoxia_target’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Apr 19, 2024
  • Workshop Public

    课题组每周研讨会

    XSLiuLab/Workshop’s past year of commit activity
    HTML 175 50 2 0 Updated Apr 17, 2024
  • MethyDeep Public
    XSLiuLab/MethyDeep’s past year of commit activity
    Python 3 1 0 0 Updated Jul 26, 2023
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