Default threshold to 1.0

algbio · Mar 1, 2023 · cd52419 · cd52419
1 parent cab9878
commit cd52419
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/pseudoalign_main.cpp b/src/pseudoalign_main.cpp
@@ -121,7 +121,7 @@ int pseudoalign_main(int argc_given, char** argv_given){
     ;
 
     options.add_options("Algorithm")
-        ("threshold", "Fraction of k-mer matches required to report a color. If this is equal to 1, the algorithm is implemented with a specialized set intersection method.", cxxopts::value<double>()->default_value("0.7"))
+        ("threshold", "Fraction of k-mer matches required to report a color. If this is equal to 1, the algorithm is implemented with a specialized set intersection method.", cxxopts::value<double>()->default_value("1"))
         ("include-unknown-kmers", "Include all k-mers in the pseudoalignment, even those which do not occur in the index.", cxxopts::value<bool>()->default_value("false"))
     ;