LINKS v2.0.1

This version includes bug fixes and better logs for users

LINKS v2.0.0

C++ implementation of LINKS with computational and memory optimizations

LINKS v1.8.7

bug fixes and improved docs

LINKS v1.8.6

When pipelined with the ARCS/ARKS scaffolder, LINKS v1.8.6 prioritizes paths with shorter gaps only when there are no ambiguous gaps distances with the neighboring sequences considered. Add linkage information (ID and size) to the output .gv graph. We now provide a utility (./tools/consolidateGraphs.pl) to highlight differences between two LINKS graphs. Implement -z min_size with an ARCS checkpoint.

LINKS v1.8.5

When pipelined with the ARCS scaffolder, LINKS now extracts information from the tigpair_checkpoint.tsv file to generate an enhanced .gv file with additional information regarding other potential linking partners, number of supports and sequence orientation.