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@bowang-lab

WangLab @ U of T

BoWang's Lab at University of Toronto

Popular repositories Loading

  1. MedSAM MedSAM Public

    Segment Anything in Medical Images

    Jupyter Notebook 3.2k 449

  2. scGPT scGPT Public

    Jupyter Notebook 1.1k 232

  3. U-Mamba U-Mamba Public

    U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation

    Python 744 73

  4. MedRAX MedRAX Public

    MedRAX: Medical Reasoning Agent for Chest X-ray

    Python 290 56

  5. Graph-Mamba Graph-Mamba Public

    Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State Spaces

    Python 267 35

  6. MedSAMSlicer MedSAMSlicer Public

    3D Slicer Plugin for Segment anything in medical images

    Python 199 25

Repositories

Showing 10 of 49 repositories
  • MorphoDiff Public

    This is the official repository of MorphoDiff, a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions based on perturbation encoding.

    bowang-lab/MorphoDiff’s past year of commit activity
    Jupyter Notebook 6 Apache-2.0 2 1 0 Updated Feb 11, 2025
  • MedRAX Public

    MedRAX: Medical Reasoning Agent for Chest X-ray

    bowang-lab/MedRAX’s past year of commit activity
    Python 290 Apache-2.0 56 6 (1 issue needs help) 0 Updated Feb 10, 2025
  • AGILE Public

    AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery

    bowang-lab/AGILE’s past year of commit activity
    Python 30 MIT 4 3 0 Updated Feb 8, 2025
  • scGPT-spatial Public
    bowang-lab/scGPT-spatial’s past year of commit activity
    Jupyter Notebook 46 MIT 7 1 0 Updated Feb 9, 2025
  • AgentTutorial Public
    bowang-lab/AgentTutorial’s past year of commit activity
    Jupyter Notebook 7 Apache-2.0 0 0 0 Updated Feb 4, 2025
  • IntegrAO Public

    Integrate Any Omics: Towards genome-wide data integration for patient stratification

    bowang-lab/IntegrAO’s past year of commit activity
    Jupyter Notebook 30 MIT 6 1 0 Updated Jan 27, 2025
  • Orthrus Public

    Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.

    bowang-lab/Orthrus’s past year of commit activity
    Python 52 MIT 8 3 0 Updated Jan 22, 2025
  • genomic-FM Public
    bowang-lab/genomic-FM’s past year of commit activity
    Python 20 3 1 0 Updated Jan 20, 2025
  • ECG-FM Public

    An electrocardiogram analysis foundation model.

    bowang-lab/ECG-FM’s past year of commit activity
    Jupyter Notebook 122 MIT 5 2 0 Updated Jan 7, 2025
  • MedSAMSlicer Public

    3D Slicer Plugin for Segment anything in medical images

    bowang-lab/MedSAMSlicer’s past year of commit activity
    Python 199 25 1 1 Updated Dec 31, 2024
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