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update docs

update docs #550

name: Build and Validation with CPU inference
on:
push:
branches:
- master
pull_request:
branches:
- master
jobs:
build_validation:
runs-on: [self-hosted, linux, x64]
if: github.repository_owner == 'deepmodeling'
container:
image: ubuntu:20.04
options: --shm-size=5g # shared memory size = 5GB
steps:
- name: Checkout
uses: actions/checkout@v3
- name: install dependencies
env:
DEBIAN_FRONTEND: noninteractive
run: |
apt-get update
apt-get install -y sudo wget unzip git software-properties-common make cmake g++ mpich openmpi-bin libopenmpi-dev libscalapack-mpi-dev vim git-core
sudo sh -c "wget -O - https://dl.openfoam.org/gpg.key | apt-key add -"
sudo add-apt-repository http://dl.openfoam.org/ubuntu
sudo apt-get update
export DEBIAN_FRONTEND=noninteractive
apt-get -y install openfoam7
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b
. ~/miniconda3/etc/profile.d/conda.sh
conda create -n libcantera python=3.8
conda activate libcantera
conda install -c cantera libcantera-devel=2.6
conda install -c cantera cantera
conda install pytorch pybind11
conda install pkg-config
conda install --channel https://conda.anaconda.org/zhaofeng-shu33 easydict
git clone https://github.com/deepmodeling/deepflame-dev.git
cd deepflame-dev
- name: build and validation with CPU inference
env:
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
OMPI_MCA_btl_vader_single_copy_mechanism: none
run:
/bin/bash -c " echo $PWD && ls $PWD
&& wget --content-disposition https://aisquare.oss-us-east-1.aliyuncs.com/data/datasets/14b50df5-dbe9-4f1c-bf58-032b8bc40a20
&& unzip flare_CH4_SandiaD_4D.zip
&& ls $PWD
&& cp -r flare_CH4_SandiaD_4D.tbl examples/dfLowMachFoam/fgm/twoD_SandiaD_flareFGM
&& source ~/miniconda3/etc/profile.d/conda.sh && conda activate libcantera && source /opt/openfoam7/etc/bashrc
&& . configure.sh --use_pytorch&& source ./bashrc && . install.sh
&& cd test && ./Allrun && conda deactivate "
- name: test
run: |
cd test
cmake -B build
cmake --build build
cd build
ctest --output-on-failure