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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 217 112

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 198 47

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 98 91

  4. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 86 36

  5. task-execution-schemas task-execution-schemas Public

    83 29

  6. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    83 39

Repositories

Showing 10 of 125 repositories
  • quality-control-wgs Public

    Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

    ga4gh/quality-control-wgs’s past year of commit activity
    Jupyter Notebook 14 Apache-2.0 4 7 1 Updated Feb 20, 2025
  • gks-core Public

    Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)

    ga4gh/gks-core’s past year of commit activity
    Python 2 Apache-2.0 0 4 2 Updated Feb 19, 2025
  • refget Public

    GA4GH Refget specifications docs

    ga4gh/refget’s past year of commit activity
    HTML 14 8 18 1 Updated Feb 19, 2025
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 86 Apache-2.0 36 22 (1 issue needs help) 4 Updated Feb 19, 2025
  • gks-metaschema Public

    Tools and scripts for parsing the GKS standards metaschemas

    ga4gh/gks-metaschema’s past year of commit activity
    Python 0 Apache-2.0 3 6 (1 issue needs help) 1 Updated Feb 19, 2025
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 18 Apache-2.0 5 125 (2 issues need help) 5 Updated Feb 19, 2025
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Makefile 3 Apache-2.0 2 11 (2 issues need help) 0 Updated Feb 17, 2025
  • task-execution-schemas Public
    ga4gh/task-execution-schemas’s past year of commit activity
    83 Apache-2.0 29 40 9 Updated Feb 14, 2025
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    ga4gh/vrs-python’s past year of commit activity
    Python 53 Apache-2.0 30 43 (1 issue needs help) 5 Updated Feb 14, 2025
  • va-spec-python Public

    GA4GH Variation Annotation Python Implementation

    ga4gh/va-spec-python’s past year of commit activity
    Python 1 Apache-2.0 1 4 0 Updated Feb 13, 2025
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