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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 774 158

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 173 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 298 47

Repositories

Showing 10 of 366 repositories
  • gehlenborglab-website Public

    Code for Gehlenborg Lab website.

    hms-dbmi/gehlenborglab-website’s past year of commit activity
    TypeScript 9 MIT 38 22 17 Updated Feb 21, 2025
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 4 1 1 Updated Feb 21, 2025
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Feb 21, 2025
  • pic-sure-bdc-infrastructure Public
    hms-dbmi/pic-sure-bdc-infrastructure’s past year of commit activity
    HCL 5 Apache-2.0 1 0 3 Updated Feb 21, 2025
  • service-workbench-automation-security-scripts Public
    hms-dbmi/service-workbench-automation-security-scripts’s past year of commit activity
    Python 0 Apache-2.0 1 0 1 Updated Feb 21, 2025
  • CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    hms-dbmi/CHIEF’s past year of commit activity
    Python 570 AGPL-3.0 89 31 10 Updated Feb 20, 2025
  • ETLToolSuite-EntityGenerator Public

    This tool will generate Entity Files that can be used to load into Datasources.

    hms-dbmi/ETLToolSuite-EntityGenerator’s past year of commit activity
    Java 0 Apache-2.0 1 0 0 Updated Feb 20, 2025
  • udi-prototype Public

    For saving prototyping / brainstorming / exploring code for the UDI project.

    hms-dbmi/udi-prototype’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 19, 2025
  • udi-chat Public

    For experimenting with chat based interface for the Universal Discovery Interface.

    hms-dbmi/udi-chat’s past year of commit activity
    TypeScript 0 MIT 0 0 1 Updated Feb 19, 2025
  • udi-grammar Public

    The Universal Discovery Interface Grammar.

    hms-dbmi/udi-grammar’s past year of commit activity
    TypeScript 0 MIT 0 0 2 Updated Feb 19, 2025
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