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TCGA-Storage

Dependencies

Used for building the app. Not necessary see Running the app for more details.

Install task file with go

go install github.com/go-task/task/v3/cmd/task@latest

or with winget.

winget install Task.Task

Docker, docker-compose

Used for deployment of containers.

Note that docker-compose uses MINIO_ROOT_USER and MINIO_ROOT_PASSWORD variables, it is best to define them in .env file as so

MINIO_ROOT_USER = admin
MINIO_ROOT_PASSWORD = YourSuperSecretPassword

.NET 7

Used for running the scrapper

Running the app

Create appsettings.json based on appsettings.example.json.

To run the app use task run which will pull and start the containers, install dependencies and start the app. Alternativly if you have your own containers just use go get to install dependencies and go run . to run a program

Exit with ctrl + c and run task stop to stop containers

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PPPK projec that stores TCGA data

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