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mjsull edited this page Jul 14, 2015 · 7 revisions

Hapflow

Visualising haplotypes in sequencing data

HapFlow is a python application for visualising haplotypes present in sequencing data. It identifies variant profiles present and reads and creates an abstract visual representation of these profiles to make haplotypes easier to identify.

Mixed strain Chlamydia infection

HapFlow representation of Illumina reads from a mixed-strain Chlamydia infection.

HapFlow

  1. Home
  2. Description
  3. Creating a flow file
  4. Interpreting data using HapFlow
  5. Installation
  6. Windows
  7. OSX
  8. Linux
  9. Using HapFlow
  10. Quick start
  11. Tutorial 1
  12. Tutorial 2
  13. GUI options
  14. Command line
  15. Performance
  16. Flow file format
  17. FAQ
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