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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 129

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 292 163

Repositories

Showing 10 of 89 repositories
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 44 26 25 4 Updated Sep 20, 2024
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 18 9 Updated Sep 19, 2024
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 87 AGPL-3.0 49 73 (2 issues need help) 10 Updated Sep 19, 2024
  • measles Public

    Nextstrain build for measles virus

    nextstrain/measles’s past year of commit activity
    Python 0 6 5 4 Updated Sep 19, 2024
  • ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    nextstrain/ncov’s past year of commit activity
    Python 1,351 MIT 403 71 26 Updated Sep 18, 2024
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 268 AGPL-3.0 129 228 (1 issue needs help) 57 Updated Sep 17, 2024
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 19 7 9 2 Updated Sep 17, 2024
  • oropouche Public

    Oropouche Nextstrain build

    nextstrain/oropouche’s past year of commit activity
    Python 0 0 2 1 Updated Sep 16, 2024
  • conda-base Public

    Conda package build for nextstrain-base

    nextstrain/conda-base’s past year of commit activity
    Shell 1 1 7 2 Updated Sep 16, 2024
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 292 AGPL-3.0 163 226 (4 issues need help) 49 Updated Sep 16, 2024
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