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Nagl2 ddx defaultsettings #380

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Nagl2 ddx defaultsettings #380

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amcisaac
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@amcisaac amcisaac commented Sep 17, 2024

New Submission Checklist

  • Created a new folder in the submissions directory containing the dataset
  • Added README.md describing the dataset see here for examples
  • All files used to produce the dataset are included with a description
  • Dataset follows the QCSubmit schema defined for Datasets, OptimizationDatasets and TorsionDriveDatasets
  • Dataset filename matches pattern dataset*.json; may feature a compression extension, such as .bz2
  • A PDF depicting the molecules is attached, in the case of torsiondrives this should include the highlighting of the central bond, this can be done automatically using qcsubmit.
  • QCSubmit validation passed
  • Made a new dataset entry in the mapping table in repository README.md
  • Ready to submit!

Compute Expansion Checklist

  • Compute expansion filename matches pattern compute*.json; may feature a compression extension, such as .bz2
  • QCSubmit validation passed
  • Ready to submit!

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QCSubmit Validation Report

submissions/2024-09-16-NAGL2-ESP-Timing-Benchmark-ddx-v1.0/dataset.json.bz2
Dataset Name OpenFF NAGL2 ESP Timing Benchmark ddx v1.0
Dataset Type DataSet
Elements P ,H ,N ,F ,Br ,I ,S ,O ,C ,Cl
Valid Cmiles 🔥
Connected Dihedrals 🔥
No Linear Torsions 🔥
No Molecular Complexes 🔥
Valid Constraints 🔥
Complete Metatdata 🔥

QC Specification Report

submissions/2024-09-16-NAGL2-ESP-Timing-Benchmark-ddx-v1.0/dataset.json.bz2/wB97X-V/def2-TZVPPD/ddx-water
Specification Name wB97X-V/def2-TZVPPD/ddx-water
Method wb97X-V
Basis def2-TZVPPD
Wavefunction Protocol none
Implicit Solvent {"ddx_model": "pcm", "ddx_radii_scaling": 1.1, "ddx_radii_set": "uff", "ddx_solvent_epsilon": 78.4, "ddx_solvent": "water"}
Keywords {"dft_spherical_points": 590, "dft_radial_points": 99}
Validated 🔥
Valid SCF Properties 🔥
Full Basis Coverage 🔥
QCSubmit version information(click to expand)
version
openff.qcsubmit 0.53.0
openff.toolkit 0.16.4
basis_set_exchange 0.10
qcelemental 0.28.0
rdkit 2024.03.5

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QCSubmit Validation Report

submissions/2024-09-16-NAGL2-ESP-Timing-Benchmark-ddx-v1.0/dataset.json.bz2
Dataset Name OpenFF NAGL2 ESP Timing Benchmark ddx v1.0
Dataset Type DataSet
Elements Br ,F ,I ,N ,Cl ,C ,P ,H ,S ,O
Valid Cmiles 🔥
Connected Dihedrals 🔥
No Linear Torsions 🔥
No Molecular Complexes 🔥
Valid Constraints 🔥
Complete Metatdata 🔥

QC Specification Report

submissions/2024-09-16-NAGL2-ESP-Timing-Benchmark-ddx-v1.0/dataset.json.bz2/pbe0/def2-TZVPPD/ddx-water
Specification Name pbe0/def2-TZVPPD/ddx-water
Method pbe0
Basis def2-TZVPPD
Wavefunction Protocol none
Implicit Solvent {"ddx_model": "pcm", "ddx_radii_scaling": 1.1, "ddx_radii_set": "uff", "ddx_solvent_epsilon": 78.4, "ddx_solvent": "water"}
Keywords {"dft_spherical_points": 590, "dft_radial_points": 99}
Validated 🔥
Valid SCF Properties 🔥
Full Basis Coverage 🔥
QCSubmit version information(click to expand)
version
openff.qcsubmit 0.53.0
openff.toolkit 0.16.4
basis_set_exchange 0.10
qcelemental 0.28.0
rdkit 2024.03.5

@openff-dangerbot
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QCSubmit Validation Report

submissions/2024-09-16-NAGL2-ESP-Timing-Benchmark-ddx-v1.0/dataset.json.bz2
Dataset Name OpenFF NAGL2 ESP Timing Benchmark ddx v1.0
Dataset Type DataSet
Elements Br ,F ,I ,N ,Cl ,C ,P ,H ,S ,O
Valid Cmiles 🔥
Connected Dihedrals 🔥
No Linear Torsions 🔥
No Molecular Complexes 🔥
Valid Constraints 🔥
Complete Metatdata 🔥

QC Specification Report

submissions/2024-09-16-NAGL2-ESP-Timing-Benchmark-ddx-v1.0/dataset.json.bz2/pbe0/def2-TZVPPD/ddx-water
Specification Name pbe0/def2-TZVPPD/ddx-water
Method pbe0
Basis def2-TZVPPD
Wavefunction Protocol none
Implicit Solvent {"ddx_model": "pcm", "ddx_radii_scaling": 1.1, "ddx_radii_set": "uff", "ddx_solvent_epsilon": 78.4, "ddx_solvent": "water"}
Keywords {"dft_spherical_points": 590, "dft_radial_points": 99}
Validated 🔥
Valid SCF Properties 🔥
Full Basis Coverage 🔥
QCSubmit version information(click to expand)
version
openff.qcsubmit 0.53.0
openff.toolkit 0.16.4
basis_set_exchange 0.10
qcelemental 0.28.0
rdkit 2024.03.5

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