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@piquelab

Pique-Regi Lab

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  1. QuASAR QuASAR Public

    Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data

    R 27 10

  2. sclabor sclabor Public

    scRNA-seq analysis of placental tissues at labor

    Jupyter Notebook 6 2

  3. Parturition_paper Parturition_paper Public

    R 3 1

  4. GxE_pipeline GxE_pipeline Public

    Workflow for the Gene Environment Interaction project

    R 2 3

  5. scaip scaip Public

    Single Cell Asthma Immunology Project

    R 2

  6. counts_cellranger counts_cellranger Public

    General script to run cellranger counts.

    Shell 2 1

Repositories

Showing 10 of 46 repositories
  • GxM_IBD Public
    piquelab/GxM_IBD’s past year of commit activity
    0 0 0 0 Updated Feb 12, 2025
  • QuASAR2 Public Forked from piquelab/QuASAR

    Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data

    piquelab/QuASAR2’s past year of commit activity
    R 0 MIT 10 0 0 Updated Feb 12, 2025
  • Il9scRNA Public Forked from piquelab/murine_scRNA

    The single-cell analysis of Il9 mouse model

    piquelab/Il9scRNA’s past year of commit activity
    R 0 MIT 1 0 0 Updated Jan 24, 2025
  • sc_multiome Public
    piquelab/sc_multiome’s past year of commit activity
    R 0 1 0 0 Updated Jan 8, 2025
  • ArchR Public Forked from GreenleafLab/ArchR

    ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

    piquelab/ArchR’s past year of commit activity
    R 0 MIT 142 0 0 Updated Dec 20, 2024
  • sc-atac Public

    single cell ATAC data analysis

    piquelab/sc-atac’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 5, 2024
  • counts_cellranger Public

    General script to run cellranger counts.

    piquelab/counts_cellranger’s past year of commit activity
    Shell 2 1 0 0 Updated Jun 21, 2024
  • fastdemux Public

    Demultiplexing by genotype

    piquelab/fastdemux’s past year of commit activity
    C 0 MIT 0 1 0 Updated May 8, 2024
  • counts_cellranger_atac Public Forked from piquelab/counts_cellranger

    General script to run cellranger-atac counts.

    piquelab/counts_cellranger_atac’s past year of commit activity
    Shell 1 1 0 0 Updated May 3, 2024
  • bc_grid_rstudio_server Public Forked from mcw-rcc/bc_rcc_rstudio_server

    RStudio Server app for Open OnDemand

    piquelab/bc_grid_rstudio_server’s past year of commit activity
    Shell 0 MIT 8 0 0 Updated Apr 23, 2024
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