bump versions (#1642)

requirements/CI/requirements.txt

@@ -1,15 +1,15 @@
-coverage==7.5.4
-flake8==5.0.4
-pytest==8.2.2
-pytest-cov==5.0.0
+coverage==7.6.10
+flake8==7.1.1
+pytest==8.3.4
+pytest-cov==6.0.0
 pytest-xdist==3.6.1
 setuptools-scm==8.1.0
-sphinx==5.0.2
-sphinx-argparse==0.4.0
-sphinx-issues==3.0.1
-sphinx_rtd_theme==1.2.0
+sphinx==8.1.3
+sphinx-argparse==0.5.2
+sphinx-issues==5.0.0
+sphinx_rtd_theme==3.0.2
 sphinxcontrib-programoutput==0.18
-attrs==24.2.0
+attrs==24.3.0
 appdirs==1.4.4
 humanize==4.11.0
 pyslim==1.0.4