fix missing del when giving up on vsearch indel combination

psathyrella · Dec 12, 2023 · ef0e797 · ef0e797
1 parent aa8db0c
commit ef0e797
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/python/waterer.py b/python/waterer.py
@@ -1542,6 +1542,7 @@ def combine_indels(self, qinfo, best, debug=False):
             if 'v' in qinfo['new_indels']:  # if sw kicks up an additional v indel that vsearch didn't find, we rerun sw with <self.args.no_indel_gap_open_penalty>
                 if debug:
                     print '      sw called a v indel, but there\'s already a vsearch v indel, so give up (rerun sw forbidding indels)'
+                del self.info['indels'][qinfo['name']]
                 return None
 
             vs_indelfo = self.info['indels'][qinfo['name']]