GitHub - raspbian-packages/bcftools

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Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
debian		debian
doc		doc
plugins		plugins
test		test
AUTHORS		AUTHORS
HMM.c		HMM.c
HMM.h		HMM.h
INSTALL		INSTALL
LICENSE		LICENSE
Makefile		Makefile
README		README
bcftools.h		bcftools.h
call.h		call.h
ccall.c		ccall.c
consensus.c		consensus.c
convert.c		convert.c
convert.h		convert.h
em.c		em.c
filter.c		filter.c
filter.h		filter.h
gvcf.c		gvcf.c
gvcf.h		gvcf.h
khash_str2str.h		khash_str2str.h
kmin.c		kmin.c
kmin.h		kmin.h
main.c		main.c
mcall.c		mcall.c
peakfit.c		peakfit.c
peakfit.h		peakfit.h
ploidy.c		ploidy.c
ploidy.h		ploidy.h
plot-vcfstats		plot-vcfstats
polysomy.c		polysomy.c
prob1.c		prob1.c
prob1.h		prob1.h
rbuf.h		rbuf.h
reheader.c		reheader.c
tabix.c		tabix.c
tsv2vcf.c		tsv2vcf.c
tsv2vcf.h		tsv2vcf.h
vcfannotate.c		vcfannotate.c
vcfcall.c		vcfcall.c
vcfcnv.c		vcfcnv.c
vcfconcat.c		vcfconcat.c
vcfconvert.c		vcfconvert.c
vcffilter.c		vcffilter.c
vcfgtcheck.c		vcfgtcheck.c
vcfindex.c		vcfindex.c
vcfisec.c		vcfisec.c
vcfmerge.c		vcfmerge.c
vcfnorm.c		vcfnorm.c
vcfplugin.c		vcfplugin.c
vcfquery.c		vcfquery.c
vcfroh.c		vcfroh.c
vcfsom.c		vcfsom.c
vcfstats.c		vcfstats.c
vcfutils.pl		vcfutils.pl
vcfview.c		vcfview.c
vcmp.c		vcmp.c
vcmp.h		vcmp.h
version.c		version.c

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BCFtools implements utilities for variant calling (in conjunction with
SAMtools) and manipulating VCF and BCF files.  The program is intended
to replace the Perl-based tools from vcftools.

See INSTALL for building and installation instructions.