This Python script converts a TSV (Tab-Separated Values) file containing gene node information into a Cytoscape CX2 JSON file. The output file retains full node table information and follows the CX2 format used by Cytoscape and Cytoscape Web.
Run the Script:
Open a terminal (or command prompt) and run the script using Python:
python converter.pyWhen prompted, type in the name of your TSV file (including the .tsv extension), then press Enter.
The script will process the TSV file and create a new file with the same base name as the input but with a .cx2 extension. For example, if your input file is myData.tsv, the output will be myData.cx2.