PrimeKGQA

This is a repo for generation questions from PrimeKG

The dataset is uploaded in the zenedo: https://zenodo.org/records/13348627

Project Name

Description

This code base extracts subgraphs from an endpoint, form sparqls, extract answers. The above info would be sent to LLM for question generation.

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Prerequisites

• Python Version:3.8 and above
• pip install -r requirement.tex

How to run

• go to folder 'extract'

• run endExtract.py and statistics.py

• they would extract subgraphs based on the network motifs and output json files with related info

• go to folder generation

• rub mistral_baseline.py

• generate question from LLM

dataset for download

• https://zenodo.org/records/13829395

Please cite our publication if you find this work useful

@incollection{yan2024bridging,
title={Bridging the Gap: Generating a Comprehensive Biomedical Knowledge Graph Question Answering Dataset},
author={Yan, Xi and Westphal, Patrick and Seliger, Jan and Usbeck, Ricardo},
booktitle={ECAI 2024},
pages={1198--1205},
year={2024},
publisher={IOS Press}
}
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