Making Protein folding accessible to all via Google Colab!
- AlphaFold2_mmseqs2 - predict monomers/homooligomers, w/ MMseqs2 for MSA/template generation
- AlphaFold2_jackhmmer - predict monomers/homooligomers, w/ jackhmmer for MSA generation
- RoseTTAFold - predict monomers
Experimental notebooks:
- AlphaFold2_complexes - predict heterodimers, w/ MMseqs2 for MSA generation
- AlphaFold2_noTemplates_noMD
- AlphaFold2_noTemplates_yesMD
External notebooks:
- AlphaFold2 - Official Notebook from Deepmind, no templates, monomers only.
Acknowledgments
- We would like to thank the RoseTTAFold and AlphaFold team for doing an excellent job open sourcing the software.
- Also credit to David Koes for his awesome py3Dmol plugin, without whom these notebooks would be quite boring!
- A colab by Sergey Ovchinnikov (@sokrypton), Milot Mirdita (@milot_mirdita) and Martin Steinegger (@thesteinegger).
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